CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86430	Sorghum	cytosol, nucleus, plastid	37.82	44.7
EES00400	Sorghum	cytosol	43.59	41.46
EES00397	Sorghum	plastid	41.03	39.75
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	36.86	37.58
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	36.22	36.45
TraesCS3B01G054000.1	Wheat	cytosol	35.9	35.78
TraesCSU01G043700.1	Wheat	cytosol	34.94	34.49
TraesCS3B01G028000.1	Wheat	mitochondrion	29.17	34.47
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	35.26	31.52
EES02585	Sorghum	cytosol, nucleus, plastid	32.05	30.77
OQU88982	Sorghum	plastid	24.68	30.56
OQU86433	Sorghum	cytosol, nucleus, plastid	33.33	29.13
KXG32022	Sorghum	nucleus	29.49	27.3
EES00395	Sorghum	cytosol, nucleus, plastid	28.53	26.02
KXG32016	Sorghum	cytosol	26.6	25.78
OQU86440	Sorghum	nucleus, plasma membrane, plastid	24.36	22.62
Os01t0121900-00	Rice	cytosol	17.31	18.24

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1B6Q2E3	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlants:KXG32025	ProteinID:KXG32025	ProteinID:KXG32025.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G092300	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00081AD98D	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:8031267..8032736

Molecular Weight (calculated)

33696.6 Da

IEP (calculated)

8.075

GRAVY (calculated)

-0.246

Length

312 amino acids

Sequence
(BLAST)

001: MERVEQQNTK KPRVDAKFPM RRVKQEVEEG QATAGAGAMV AVQVAAPVVD LEVRIEKAKL DCPRCTMPLK PPIFQFQCEA GHLACGTCYA VLTKDKCYSC
101: HRDGAYRRHT PLEGIVSCAK VLCPYDVYGC RTYVTYHEAG DHQRDCPCAP CRCSEPGCAF VGSPPMLRDH LRDTHAWPVD KITYGRAHNI RLPETCPPRL
201: LEAEDDGRVF FVAVGAHGAR IGVTVACVRA SAAAGPRYSC KLWASGNPGA ETGRVEIAMA EADVPSSSAV PGPGDAATAA AAEAAPLSVR RSMLHGKSME
301: MLLSIKIDKS KN

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.