CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88982	Sorghum	plastid	39.78	56.35
EES02585	Sorghum	cytosol, nucleus, plastid	38.38	42.15
EES00397	Sorghum	plastid	33.05	36.65
TraesCS3B01G053300.1	Wheat	plastid	20.45	35.78
KXG32025	Sorghum	cytosol	29.13	33.33
EES00400	Sorghum	cytosol	29.41	32.01
TraesCS3A01G065800.1	Wheat	cytosol	17.09	31.12
TraesCS3A01G065900.1	Wheat	cytosol	19.89	31.0
OQU86430	Sorghum	cytosol, nucleus, plastid	22.69	30.68
HORVU4Hr1G016950.1	Barley	plastid	25.77	30.07
EES00395	Sorghum	cytosol, nucleus, plastid	28.29	29.53
KXG32022	Sorghum	nucleus	26.05	27.6
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	24.37	26.85
OQU86440	Sorghum	nucleus, plasma membrane, plastid	25.21	26.79
KXG32016	Sorghum	cytosol	24.09	26.71
TraesCS3B01G116800.1	Wheat	cytosol	22.69	24.55
TraesCS6D01G324500.1	Wheat	plastid	22.97	23.5
TraesCS6B01G375700.1	Wheat	plastid	23.25	23.45
TraesCS6B01G375600.1	Wheat	plastid	22.41	23.05
TraesCS6A01G343600.1	Wheat	plastid	21.85	22.48
TraesCS7B01G197600.1	Wheat	cytosol	15.69	22.05
TraesCS7D01G107300.1	Wheat	nucleus	29.41	21.74
HORVU6Hr1G082920.1	Barley	plastid	22.97	21.41
TraesCS3A01G020900.1	Wheat	cytosol	17.09	20.47
TraesCSU01G040400.1	Wheat	cytosol	17.09	20.47
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	27.17	19.76
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.73	19.22
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	27.17	19.02
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	17.65	17.9
TraesCS3B01G079200.1	Wheat	cytosol, plastid	26.61	15.99

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1W0VWC6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlants:OQU86433	ProteinID:OQU86433	ProteinID:OQU86433.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G090800	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0009DC922D	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:7914736..7917366

Molecular Weight (calculated)

37484.0 Da

IEP (calculated)

8.611

GRAVY (calculated)

-0.130

Length

357 amino acids

Sequence
(BLAST)

001: MSIGTRRWPS GETTSSSKKT KVVLPGSSCP VYSAGMKEEP DQGGIAHGGA GTAVAEEASQ ALERPRINIS VDVQLLHCAV PECRRPLKPP VVKCETRHLL
101: CGACHDGGHC RKCDRATAFA HCGPELDLVI GDARVPCPFK SYGCGASIVY HATAAHQDAC AYAPCHCAVP GCPFTAAPPR LRDHLAVDYA WPLDTLPAYG
201: KALPLRVPSR SRRRRRSRSR SRLLVVDGDE RSLFALTVRP CGGAASCAVS VSCVRTSAAA EAGPRFTYVL WARSPAAAPG SGMAPGSASR HLMMEADVAS
301: CAVPGGAAVE EGMALYVPPP MLSGPPNSKE MHLRVSINVV DSAPAPQRSA CSSSPRV

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.