Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G100700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 82.42 | 83.95 |
TraesCS6B01G375600.1 | Wheat | plastid | 40.61 | 38.62 |
TraesCS3B01G053300.1 | Wheat | plastid | 23.64 | 38.24 |
TraesCS6B01G375700.1 | Wheat | plastid | 38.18 | 35.59 |
TraesCS7B01G147600.1 | Wheat | plastid | 21.21 | 30.7 |
TraesCS3B01G079100.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 26.67 | 27.08 |
EES02585 | Sorghum | cytosol, nucleus, plastid | 26.36 | 26.77 |
TraesCS7B01G351200.1 | Wheat | cytosol, nucleus, plastid | 24.55 | 26.3 |
TraesCS3B01G079000.1 | Wheat | cytosol, nucleus, plastid | 24.24 | 25.72 |
TraesCS4B01G109100.1 | Wheat | cytosol, nucleus, plasma membrane | 21.21 | 25.36 |
TraesCS7B01G040200.1 | Wheat | cytosol | 24.24 | 25.32 |
TraesCS7B01G030300.1 | Wheat | plastid | 24.24 | 24.84 |
TraesCS3B01G028800.1 | Wheat | cytosol, nucleus, peroxisome | 24.85 | 24.62 |
TraesCS3B01G026900.1 | Wheat | nucleus | 23.64 | 24.38 |
TraesCS3B01G054300.1 | Wheat | nucleus, peroxisome, plastid | 24.24 | 24.32 |
TraesCS3B01G054000.1 | Wheat | cytosol | 23.03 | 24.28 |
TraesCS3B01G030800.1 | Wheat | nucleus, plasma membrane, plastid | 21.21 | 23.89 |
TraesCS3B01G028000.1 | Wheat | mitochondrion | 19.09 | 23.86 |
TraesCS3B01G027500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 22.12 | 23.25 |
TraesCS5B01G187100.1 | Wheat | cytosol, nucleus, plastid | 19.39 | 23.19 |
OQU88982 | Sorghum | plastid | 17.58 | 23.02 |
TraesCS3B01G027400.1 | Wheat | nucleus, peroxisome, plastid | 21.52 | 22.9 |
TraesCS3B01G055200.1 | Wheat | nucleus, plasma membrane, plastid | 20.3 | 22.87 |
TraesCS4B01G105700.1 | Wheat | cytosol, nucleus, peroxisome | 33.94 | 22.81 |
OQU86433 | Sorghum | cytosol, nucleus, plastid | 24.55 | 22.69 |
TraesCS7B01G197600.1 | Wheat | cytosol | 17.27 | 22.44 |
TraesCS3B01G028400.1 | Wheat | nucleus, peroxisome, plastid | 22.73 | 22.26 |
TraesCS3B01G030900.1 | Wheat | cytosol, nucleus, plasma membrane | 21.52 | 22.12 |
TraesCS3B01G030700.1 | Wheat | nucleus, peroxisome, plastid | 20.91 | 21.5 |
TraesCS3B01G031300.1 | Wheat | nucleus, plasma membrane, plastid | 21.21 | 21.15 |
TraesCS3B01G054800.1 | Wheat | nucleus, peroxisome, plastid | 20.91 | 21.1 |
TraesCS3B01G031000.1 | Wheat | nucleus, plasma membrane, plastid | 20.91 | 21.1 |
TraesCS3B01G054900.1 | Wheat | nucleus, peroxisome, plastid | 20.91 | 21.1 |
TraesCS3B01G055100.1 | Wheat | cytosol, nucleus, peroxisome | 20.91 | 21.1 |
TraesCS3B01G054200.1 | Wheat | nucleus, peroxisome, plastid | 21.21 | 21.08 |
TraesCS3B01G055000.1 | Wheat | nucleus, peroxisome, plastid | 20.61 | 20.8 |
TraesCS3B01G055300.1 | Wheat | cytosol, nucleus, peroxisome | 20.3 | 20.49 |
TraesCS3B01G027000.1 | Wheat | cytosol, nucleus, plastid | 21.82 | 20.17 |
OQU86440 | Sorghum | nucleus, plasma membrane, plastid | 19.09 | 18.75 |
TraesCS3B01G572900.1 | Wheat | cytosol | 19.7 | 17.96 |
TraesCS3B01G573000.1 | Wheat | cytosol | 17.27 | 17.87 |
TraesCS3B01G079200.1 | Wheat | cytosol, plastid | 31.21 | 17.34 |
TraesCS3B01G018200.1 | Wheat | plastid | 22.73 | 17.16 |
TraesCS3B01G018100.1 | Wheat | nucleus, peroxisome, plasma membrane | 23.03 | 11.18 |
TraesCS1B01G344300.1 | Wheat | nucleus | 23.03 | 8.92 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR008974 |
InterPro:IPR013010 | InterPro:IPR013083 | PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF46 | InterPro:SINA-like |
SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS3B01G116800 | EnsemblPlants:TraesCS3B01G116800.1 | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:83834542..83835769
Molecular Weight (calculated)
34630.4 Da
IEP (calculated)
6.433
GRAVY (calculated)
-0.054
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGKRKDTVD GKTPLLKGRP GRKSVPAPSP AAVDAPALAA SGVKVLAGGA VAVAGAEGEV VKLLDSDVPK TVLRCDECHG PLKPPVYQCS RMHPVACGDC
101: GGGGGGGGGE CRPCAGLAAS AVYVQNAYLD TLFGYTKVAC PYRKHGCASS VAYRDAAVHA AACACAPCSC PECLLEGSPA DLVRHLTEES GRHAWGARKI
201: TYGTAHQYVF DELDSEEICE ELLVAEEDDG VFLLHIHRVE LYHHVALACV RNKAAAGPVY SSSVAVEGPP AKGLVVKLET KVVASCPAPT ELVYDDYEAL
301: SVLPRMLHER DESRELHVRV CVSKTQSISE
101: GGGGGGGGGE CRPCAGLAAS AVYVQNAYLD TLFGYTKVAC PYRKHGCASS VAYRDAAVHA AACACAPCSC PECLLEGSPA DLVRHLTEES GRHAWGARKI
201: TYGTAHQYVF DELDSEEICE ELLVAEEDDG VFLLHIHRVE LYHHVALACV RNKAAAGPVY SSSVAVEGPP AKGLVVKLET KVVASCPAPT ELVYDDYEAL
301: SVLPRMLHER DESRELHVRV CVSKTQSISE
001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M
Arabidopsis Description
Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.