Factsheet for TraesCS3B01G031300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	73.11	75.39
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	73.41	74.31
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	64.35	72.7
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	70.09	72.27
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	70.69	71.56
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	70.39	71.25
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	70.39	71.25
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	71.3	71.08
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	72.21	70.92
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	69.79	70.64
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	69.18	70.03
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	61.93	69.97
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	62.84	63.03
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	60.73	60.36
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	58.01	58.36
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	55.59	56.62
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	52.57	55.95
TraesCS7B01G030300.1	Wheat	plastid	42.3	43.48
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	37.76	40.32
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	32.93	39.49
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	32.63	39.13
Os01t0122701-00	Rice	plastid	10.88	35.64
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	31.42	33.77
EES00397	Sorghum	plastid	32.02	32.92
TraesCS7B01G147600.1	Wheat	plastid	22.66	32.89
TraesCS3B01G026900.1	Wheat	nucleus	30.51	31.56
TraesCS7B01G040200.1	Wheat	cytosol	29.61	31.01
TraesCS3B01G054000.1	Wheat	cytosol	29.0	30.67
TraesCS3B01G053300.1	Wheat	plastid	18.73	30.39
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.19	28.66
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	30.51	28.29
TraesCS3B01G573000.1	Wheat	cytosol	26.28	27.27
TraesCS3B01G028000.1	Wheat	mitochondrion	21.45	26.89
TraesCS3B01G572900.1	Wheat	cytosol	26.89	24.59
TraesCS3B01G018200.1	Wheat	plastid	32.02	24.26
TraesCS7B01G197600.1	Wheat	cytosol	16.92	22.05
TraesCS6B01G375600.1	Wheat	plastid	22.96	21.9
TraesCS3B01G116800.1	Wheat	cytosol	21.15	21.21
TraesCS6B01G375700.1	Wheat	plastid	19.34	18.08
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	25.08	16.9
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	33.84	16.47
TraesCS3B01G079200.1	Wheat	cytosol, plastid	24.17	13.47
TraesCS1B01G344300.1	Wheat	nucleus	33.84	13.15

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G031300	EnsemblPlants:TraesCS3B01G031300.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:14222450..14223551

Molecular Weight (calculated)

35078.1 Da

IEP (calculated)

8.281

GRAVY (calculated)

0.185

Length

331 amino acids

Sequence
(BLAST)

001: MHGAGPAADG RSRASPDKAA ESTKKARLDL PDGHVKEHMA RGGDGCAIVA TYGPREELAV RIDKRLLHCL LCTVPLKPPV FQCKAGHLAC GGCVAKLPFG
101: QCKACVDSGG FFDPCPALDA IVSSTRIVCP NAGCQRYMTY HEVAEHQTAC LHTPCRCTEP GCGYISAPQA LAGHLHTVHL VPMRPVQYGK VVQLQLPVLT
201: PRVVLLGVDN HVFLLILGAL GAGVTAVSMV CARARAVTCP RFMCKMWVNL EPPSAAAANG GRADFVLVEM HMRSSSSPGV VVVADEPTFL SVPRMYLVPA
301: AGIGGDGAAS LQVPLHIRID KLSPWSDQIR I

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.