Factsheet for TraesCS3B01G055300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	89.6	89.6
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	88.99	88.99
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	88.99	88.99
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	88.99	88.99
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	87.16	88.78
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	79.2	88.4
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	87.16	87.16
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	76.15	84.98
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	83.18	84.74
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	77.98	78.22
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	74.01	74.69
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	75.84	73.59
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	73.7	72.59
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	71.56	70.69
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	63.3	62.73
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	59.94	60.31
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	61.16	60.06
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	59.94	59.57
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	55.05	57.88
TraesCS7B01G030300.1	Wheat	plastid	42.81	43.48
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	39.45	41.61
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	33.03	39.13
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.03	39.13
Os01t0122701-00	Rice	plastid	11.93	38.61
TraesCS7B01G147600.1	Wheat	plastid	25.08	35.96
EES00397	Sorghum	plastid	33.95	34.47
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	30.58	32.47
TraesCS3B01G054000.1	Wheat	cytosol	29.05	30.35
TraesCS3B01G026900.1	Wheat	nucleus	29.66	30.31
TraesCS7B01G040200.1	Wheat	cytosol	29.05	30.06
TraesCS3B01G053300.1	Wheat	plastid	18.35	29.41
TraesCS3B01G028000.1	Wheat	mitochondrion	22.63	28.03
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	25.99	27.07
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	29.05	26.61
TraesCS3B01G573000.1	Wheat	cytosol	24.77	25.39
TraesCS3B01G572900.1	Wheat	cytosol	27.83	25.14
TraesCS3B01G018200.1	Wheat	plastid	33.33	24.94
TraesCS7B01G197600.1	Wheat	cytosol	16.21	20.87
TraesCS6B01G375600.1	Wheat	plastid	21.71	20.46
TraesCS3B01G116800.1	Wheat	cytosol	20.49	20.3
TraesCS6B01G375700.1	Wheat	plastid	19.57	18.08
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	34.25	16.47
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	24.16	16.09
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.08	13.8
TraesCS1B01G344300.1	Wheat	nucleus	34.25	13.15

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46
InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G055300	EnsemblPlants:TraesCS3B01G055300.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:28540507..28541595

Molecular Weight (calculated)

34737.5 Da

IEP (calculated)

7.971

GRAVY (calculated)

0.130

Length

327 amino acids

Sequence
(BLAST)

001: MQGAAGAAER RSRASPDKAD ESSKKARLDL PDGHMKQEVA GGGDGGAIVG AAYIQRVELA VRIDKQVLHC PLCTLPFKPP VFQCKAGHPA CSGCVALLPF
101: RQCKACVDGG GFFDPCPVLD AVVSSTRIRC PNAGCQWYLT YHEVVEHQKA CPHAPCQCIE PGCGYVGAPQ ALAGHLHTVH LVPVRVVQYG KVSKLQLPVS
201: TTRLVLLGDD NCMFLMTMGG LSAGVTAVSV VCARARAVTR TRFTCKMWVN LETPPVAVAN CGKEDMVLVD MHMRSSSSPG AMVAAGEPTF LMVPPMYLVP
301: AAGDGASMEV PLHIRIDKLS SWSDTLV

Best Arabidopsis Sequence Match ( AT1G66630.1 )
(BLAST)

001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.