Factsheet for TraesCS3B01G054200.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	94.28	93.43
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	93.67	92.28
TraesCSU01G043600.1	Wheat	nucleus	93.07	92.24
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	85.84	87.16
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	84.64	85.15
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	67.77	76.79
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	66.87	75.77
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	71.99	74.45
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	73.19	74.31
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	72.89	74.01
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	72.59	73.7
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	72.29	73.39
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	72.29	73.39
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	72.29	73.39
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	71.08	71.3
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	67.77	70.09
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	69.28	69.91
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	68.67	68.47
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	66.87	67.27
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	60.54	64.63
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	60.54	61.85
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	42.17	45.16
TraesCS7B01G030300.1	Wheat	plastid	43.67	45.03
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.43	40.22
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	33.43	40.22
TraesCS7B01G147600.1	Wheat	plastid	25.9	37.72
Os01t0122701-00	Rice	plastid	11.45	37.62
EES00397	Sorghum	plastid	35.24	36.34
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	31.33	33.77
TraesCS7B01G040200.1	Wheat	cytosol	31.33	32.91
TraesCS3B01G054000.1	Wheat	cytosol	30.72	32.59
TraesCS3B01G053300.1	Wheat	plastid	19.88	32.35
TraesCS3B01G026900.1	Wheat	nucleus	31.02	32.19
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	29.22	30.89
TraesCS3B01G028000.1	Wheat	mitochondrion	22.89	28.79
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	30.42	28.29
TraesCS3B01G018200.1	Wheat	plastid	35.24	26.77
TraesCS3B01G572900.1	Wheat	cytosol	28.92	26.52
TraesCS3B01G573000.1	Wheat	cytosol	25.3	26.33
TraesCS6B01G375600.1	Wheat	plastid	24.7	23.63
TraesCS7B01G197600.1	Wheat	cytosol	18.07	23.62
TraesCS3B01G116800.1	Wheat	cytosol	21.08	21.21
TraesCS6B01G375700.1	Wheat	plastid	21.08	19.77
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	27.41	18.53
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	35.84	17.5
TraesCS3B01G079200.1	Wheat	cytosol, plastid	27.11	15.15
TraesCS1B01G344300.1	Wheat	nucleus	35.24	13.73

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G054200	EnsemblPlants:TraesCS3B01G054200.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:27994027..27995162

Molecular Weight (calculated)

34615.8 Da

IEP (calculated)

7.016

GRAVY (calculated)

0.058

Length

332 amino acids

Sequence
(BLAST)

001: MPGAAVDGRS RASPDKADEE SAKKPRLDLP DAHSVKQELV APDAAGGGDP GGIVAAAAPY IPREELAVRI DKRLLHCPLC TLPFKPPVFQ CKAGHLACGG
101: CVAELPCGQC KACVDGGGFF DPCPALDAVV SSIRTECPNA GCKRYVTYHE VPEHQTACPH APCRCTEPGC GYVGAPQALA GHLHTVHSVP VRAVEYGKAS
201: QLRVPVSAPR LVLLGDDDNR VLLLTVGALG AGVTAVSVVC ARASAATRPR FACKMWVNLE PANCGKEDMV LVDMHMRSSS SPGAVVAAGE PTFLPVPRMY
301: LVPAAAGDGA ASMEVPLHIR IDKLSPWSDA LV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.