Factsheet for TraesCS3B01G030800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	83.62	83.62
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	88.05	80.37
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	88.05	78.9
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	83.96	76.64
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	84.98	76.15
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	83.96	75.23
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	83.62	74.92
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	83.62	74.92
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	82.94	74.31
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	80.89	72.7
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	76.79	69.44
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	76.79	67.77
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	77.47	67.36
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	72.7	64.35
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	67.24	59.7
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	60.75	57.23
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	64.85	57.06
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	61.09	55.08
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	61.43	54.71
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	42.66	40.32
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	37.88	40.22
TraesCS7B01G030300.1	Wheat	plastid	44.03	40.06
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	37.54	39.86
Os01t0122701-00	Rice	plastid	12.97	37.62
TraesCS7B01G147600.1	Wheat	plastid	27.65	35.53
EES00397	Sorghum	plastid	37.54	34.16
TraesCS3B01G053300.1	Wheat	plastid	22.87	32.84
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	34.47	32.79
TraesCS7B01G040200.1	Wheat	cytosol	34.13	31.65
TraesCS3B01G026900.1	Wheat	nucleus	33.11	30.31
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.06	28.98
TraesCS3B01G054000.1	Wheat	cytosol	30.38	28.43
TraesCS3B01G028000.1	Wheat	mitochondrion	23.55	26.14
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	31.74	26.05
TraesCS3B01G572900.1	Wheat	cytosol	31.06	25.14
TraesCS3B01G573000.1	Wheat	cytosol	27.3	25.08
TraesCS3B01G018200.1	Wheat	plastid	35.49	23.8
TraesCS7B01G197600.1	Wheat	cytosol	19.11	22.05
TraesCS6B01G375600.1	Wheat	plastid	25.26	21.33
TraesCS3B01G116800.1	Wheat	cytosol	23.89	21.21
TraesCS6B01G375700.1	Wheat	plastid	21.84	18.08
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	29.35	17.52
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	35.49	15.29
TraesCS3B01G079200.1	Wheat	cytosol, plastid	27.65	13.64
TraesCS1B01G344300.1	Wheat	nucleus	36.52	12.56

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G030800
EnsemblPlants:TraesCS3B01G030800.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:14022503..14023489

Molecular Weight (calculated)

30836.7 Da

IEP (calculated)

7.361

GRAVY (calculated)

0.283

Length

293 amino acids

Sequence
(BLAST)

001: MKQEAAGGGD GGAIVGATYI QRVELAVRID KQVLHCPLCT LPFKPQVFQC KAGHPACGSC VALLPFGQCK ACVDDGGFFD PCPALDAVVS STRIGCPNAG
101: CQWYVTYHEV AEHQKACPHA PCQCTEPGCG YVGAPQALAG HLHTVHLVPV RVVQYGKVSK LQLPMSTTQL VLLGDDNCVF LMTVGALGAG VTAVSVVCAR
201: ARAATRPRFT CKMWVNLETP PAAVANGGKE DMVLVDMHMR ISSSPGAVVA AGEATFLTVL PMYLVPAAGD RASMEVPLHI RIDKLSPWSD ALV

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.