Factsheet for TraesCS1B01G344300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G333100.2	Wheat	nucleus	44.13	46.59
TraesCS7B01G147600.1	Wheat	plastid	12.21	45.61
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	15.38	42.26
TraesCS7B01G030300.1	Wheat	plastid	15.49	40.99
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	14.67	40.19
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	12.91	39.86
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	12.68	39.13
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	13.38	38.91
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	14.2	37.23
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	12.56	36.52
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	13.38	35.51
TraesCS3B01G053300.1	Wheat	plastid	8.45	35.29
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	13.73	35.24
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	13.38	34.86
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	13.38	34.86
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	13.73	34.72
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	13.38	34.65
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	13.26	34.56
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	13.5	34.53
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	13.15	34.25
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	13.15	34.25
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	13.15	34.25
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	13.15	33.84
Os01t0122701-00	Rice	plastid	3.99	33.66
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	12.44	33.02
EES00397	Sorghum	plastid	12.44	32.92
TraesCS3B01G054000.1	Wheat	cytosol	11.62	31.63
TraesCS3B01G018200.1	Wheat	plastid	15.49	30.21
TraesCS3B01G028000.1	Wheat	mitochondrion	9.27	29.92
TraesCS7B01G040200.1	Wheat	cytosol	10.09	27.22
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	9.74	26.95
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	9.51	25.8
TraesCS3B01G026900.1	Wheat	nucleus	9.51	25.31
TraesCS7B01G197600.1	Wheat	cytosol	7.51	25.2
TraesCS6B01G375600.1	Wheat	plastid	9.98	24.5
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	18.78	23.53
TraesCS3B01G116800.1	Wheat	cytosol	8.92	23.03
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	9.51	22.69
TraesCS3B01G572900.1	Wheat	cytosol	9.51	22.38
TraesCS3B01G573000.1	Wheat	cytosol	8.22	21.94
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	12.32	21.38
TraesCS6B01G375700.1	Wheat	plastid	8.57	20.62
TraesCS3B01G079200.1	Wheat	cytosol, plastid	10.33	14.81

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS1B01G344300	EnsemblPlants:TraesCS1B01G344300.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:572673980..572677924

Molecular Weight (calculated)

93507.4 Da

IEP (calculated)

8.002

GRAVY (calculated)

-0.253

Length

852 amino acids

Sequence
(BLAST)

001: MESAGSSNTE PSVRKRKTHS TSPELISSSD EEDDFTPPRR FKRKKTHESK AVKGKKVSNN SPTIPTKSDE KKKKKCRPTI WCAPEFIKSA IEILKDCQRK
101: RIKKLGFGWV LSLTVDALRT RNLPVFLMDN TSESLVINVG TQGGLKITPH AVHCVLGLPN GGIDPPPLSR AIKIEQLREL KKLLGVPKDE NITVEVLYQR
201: IRLGGDDDLT IRCFIIIVFN RLLFPTTATY ITGRDAAWTS DLHNLPNIDW CKVLVHDISQ AVISWKSKRL AYSTRLAYST RLANPKKSNE PTLSLTSCTL
301: FCIIFYLDNL LSMNRLDAIE IPRIAHFTNG IIANILHEDT QIANGLETYG KLALRPKEGT CYFEDSQSQL LFTACPTSPP PTVRVPTNCS DNRASVHDGS
401: SGDPNVSKEV PAKFDHLSPS GQPSQTETLE TGDEMMEETN LDVRHKTNAT ILPDKNQAQP PSLLRTVDSS RDDLHNSASV HDGSCGDKTL TAAHGDIHTR
501: QGSVFMTANA VRTDYLSLEE ERRKSPRDSQ QMRSNGPSSE PEAAQTTEGT QVAPGTSMVR NMGSLLTMEK GVRKAGVETS FLDCRLCFRP LKPPVFQANT
601: RPIVCSIHLR KAALILTSCY DLEFVQCNGR HSVCVTCLTE LPGGQCPMCK HGGGGFVPCL LMDDIVSLAT IKCSHGGCQS YVTYHEHDDH HSACPHTPCF
701: CTEPGCSFTG PPPALLGHLA TLHSWPVHKI EYGKVLWLQV PVSEPRRLLL AEDGSVFLLV VGLLNAITAV SVVCIRASTS ALLQYPAMMW AYGPPDVAGG
801: RCMVDTPAVT SSSKPCDVAV EKLPFFLVVP PAHVFGAGAS KELSLEIRIN KM

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.