Factsheet for TraesCS3B01G079000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	90.03	85.63
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	88.42	84.62
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	89.07	83.69
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	57.23	60.75
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	64.63	60.54
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	64.31	59.35
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	62.7	59.27
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	62.7	58.56
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	54.98	58.36
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	59.16	57.32
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	58.52	55.66
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	58.52	55.66
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	58.2	55.35
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	57.88	55.05
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	57.88	55.05
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	57.56	54.74
HORVU1Hr1G023820.1	Barley	extracellular	32.48	54.59
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	55.63	53.89
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	55.95	52.57
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	47.59	47.74
TraesCS7B01G030300.1	Wheat	plastid	48.23	46.58
HORVU4Hr1G069550.1	Barley	plastid	27.65	44.1
TraesCS7B01G147600.1	Wheat	plastid	30.87	42.11
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	36.01	40.58
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	35.69	40.22
Os01t0122701-00	Rice	plastid	12.54	38.61
EES00397	Sorghum	plastid	39.55	38.2
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	36.33	36.69
TraesCS3B01G053300.1	Wheat	plastid	23.79	36.27
TraesCS7B01G040200.1	Wheat	cytosol	36.33	35.76
TraesCS3B01G026900.1	Wheat	nucleus	34.41	33.44
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	38.59	33.33
TraesCS3B01G054000.1	Wheat	cytosol	32.8	32.59
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.48	32.17
TraesCS3B01G028000.1	Wheat	mitochondrion	24.76	29.17
TraesCS3B01G018200.1	Wheat	plastid	39.23	27.92
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	31.83	27.73
TraesCS3B01G572900.1	Wheat	cytosol	30.87	26.52
TraesCS7B01G197600.1	Wheat	cytosol	20.26	24.8
TraesCS3B01G116800.1	Wheat	cytosol	25.72	24.24
TraesCS3B01G573000.1	Wheat	cytosol	24.76	24.14
TraesCS6B01G375600.1	Wheat	plastid	25.72	23.05
TraesCS6B01G375700.1	Wheat	plastid	23.79	20.9
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	30.55	19.35
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	38.91	17.79
TraesCS1B01G344300.1	Wheat	nucleus	40.19	14.67
TraesCS3B01G079200.1	Wheat	cytosol, plastid	27.65	14.48

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G079000	EnsemblPlants:TraesCS3B01G079000.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3B:-:49866521..49867553

Molecular Weight (calculated)

32229.9 Da

IEP (calculated)

6.946

GRAVY (calculated)

0.132

Length

311 amino acids

Sequence
(BLAST)

001: MEKSDERAKK ARLELPDGHV KQEEISVHHA VGGGDEGGAI VPAEAGHGSR VELAVKIDMS LLHCPLCTLP FKPPVFQCNK GGHLACGGCV TLLPGGQCRA
101: CEDGGGFFSP CPALDAIVSS AKVACPHAAC QTYVPYHEAA DHRSACPHAP CACTEPGCGF VGAPHALAGH LADLHSVPVR TVQYGRVSQV PVSGPRQLLV
201: AEEDGRAFLL TVGALGAAAA AVSVVCVRAS AATQPRFSCK MWVNLVQPAS GGRADMALVD IQMRSSATPG AVVAVDEPTF LAVPRMYMVP VAGDAASMEV
301: SLNTRIDKIS R

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.