Factsheet for HORVU3Hr1G012260.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G023820.1	Barley	extracellular	21.39	41.62
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	36.39	40.06
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	35.56	39.38
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	35.56	38.67
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	33.33	38.59
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	33.33	38.34
HORVU4Hr1G069550.1	Barley	plastid	20.56	37.95
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	29.72	32.42
HORVU3Hr1G005290.2	Barley	plastid	31.11	29.95
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	24.17	27.88
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	9.44	25.95
HORVU2Hr1G020530.1	Barley	extracellular	9.17	25.19
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	8.89	24.43
HORVU3Hr1G005430.1	Barley	plastid	16.67	23.81
HORVU3Hr1G005470.1	Barley	plastid	20.28	22.96
EES00397	Sorghum	plastid	20.0	22.36
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	19.44	22.22
HORVU4Hr1G016950.1	Barley	plastid	17.5	20.59
HORVU6Hr1G082920.1	Barley	plastid	16.67	15.67
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	13.06	13.35
Os01t0122701-00	Rice	plastid	3.61	12.87
HORVU3Hr1G005410.9	Barley	mitochondrion	22.78	10.92
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	23.89	8.24

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A287K472	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:HORVU3Hr1G012260	EnsemblPlants:HORVU3Hr1G012260.1	InterPro:IPR008974	InterPro:IPR013083	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46
InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000B481A4D	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chrchr3H:-:26666646..26683600

Molecular Weight (calculated)

38547.9 Da

IEP (calculated)

8.889

GRAVY (calculated)

-0.446

Length

360 amino acids

Sequence
(BLAST)

001: TEGRNGGSPP TMEMAVESAE EARLERQRPC EARDRPASCG RRRRRRRPGR RRGGGARLES RARREDGHAR ASLPALHPPL QAAGLPGSLL SLLLPRTLRS
101: IIDSSVEIDV SIYRRTLGSV CVQCDGHQAC GGCVANLPGG PCSEWTCGGI FVPCSALDAI VSSTKVECQL DVPYHESSDH RSACPHAPCD CTEAGCGFVG
201: PPQELAVLHS VPLRTVEYGR VSRLRVPVVS GEGDGRAFLL TVGALVAASA AMSVVCIRAS AATPPSVLVQ DVGESGAAGE RRQGGHGPGG HPDKEQRRAR
301: RRGRRGRADV PAGAADVHGW SRRRCWGAHG GSTQHPHRQD PPLILGPDPC IMYLRFYHWH

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.