Factsheet for HORVU3Hr1G005290.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	72.73	82.18
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	69.52	80.0
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	68.98	78.42
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	69.79	78.38
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	67.91	77.44
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	68.72	77.41
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	51.87	58.79
HORVU2Hr1G020530.1	Barley	extracellular	17.38	49.62
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	17.11	48.85
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	16.84	48.09
HORVU1Hr1G023820.1	Barley	extracellular	21.93	44.32
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	36.9	44.23
EES00397	Sorghum	plastid	33.42	38.82
Os01t0122701-00	Rice	plastid	10.16	37.62
HORVU4Hr1G069550.1	Barley	plastid	19.25	36.92
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	29.95	35.56
HORVU3Hr1G005430.1	Barley	plastid	23.26	34.52
HORVU3Hr1G005470.1	Barley	plastid	27.27	32.08
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	29.95	31.11
HORVU4Hr1G016950.1	Barley	plastid	24.87	30.39
HORVU6Hr1G082920.1	Barley	plastid	20.32	19.84
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	17.11	18.18
HORVU3Hr1G005410.9	Barley	mitochondrion	32.35	16.11
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	31.28	11.21

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A287JZT5	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G005290	EnsemblPlants:HORVU3Hr1G005290.2
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000B4823D4	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287JZT5]

Coordinates

chrchr3H:+:13061921..13063602

Molecular Weight (calculated)

39352.4 Da

IEP (calculated)

7.951

GRAVY (calculated)

-0.018

Length

374 amino acids

Sequence
(BLAST)

001: PSELLFSSPH FHLRLPHKKF GPFSERVFSS LPFPSLPREQ EPGGMQAAEG RSRGSPSTMD RPDERAKKAR LELDLPNGGP VKQELVAHEA AAGGAAAIVA
101: AEARSPRAEL AVRIDMCVLH CPLCQLPFKP PVFQCKRGHL ACGGCVARLP CGQCKACADG DGFFDPCPAL DAVVSSTRVG CPNAGCHRYV TYHEADEHQR
201: ACPHAPCRCA EPGCAFVGAA PDLAFHVNAA HSVPVRSVQY GKVSRFQVPV STPRMLLVGE DDGRVFLLTA GALGAAATAV SVVCARGSAA TKPRFTCKMW
301: VNLTASAAAN GGKADIALVE MQVRSSTCPG NVVAAAEPTF LAVTPAYLVP GADGAAPMEM PLNVRIDKAL PWSD

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.