Factsheet for HORVU6Hr1G082930.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G375700.1	Wheat	plastid	55.4	55.08
HORVU6Hr1G082920.1	Barley	plastid	25.0	22.98
HORVU4Hr1G016950.1	Barley	plastid	19.6	22.55
HORVU2Hr1G020530.1	Barley	extracellular	8.24	22.14
HORVU1Hr1G023820.1	Barley	extracellular	11.36	21.62
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	7.95	21.37
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	7.95	21.37
HORVU3Hr1G005430.1	Barley	plastid	14.77	20.63
EES02585	Sorghum	cytosol, nucleus, plastid	19.03	20.62
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	17.33	19.55
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	17.05	19.05
OQU88982	Sorghum	plastid	13.64	19.05
HORVU4Hr1G069550.1	Barley	plastid	10.23	18.46
OQU86433	Sorghum	cytosol, nucleus, plastid	17.9	17.65
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	16.19	17.27
HORVU3Hr1G005290.2	Barley	plastid	18.18	17.11
HORVU3Hr1G005470.1	Barley	plastid	13.07	14.47
OQU86440	Sorghum	nucleus, plasma membrane, plastid	13.35	13.99
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	13.35	13.06
HORVU3Hr1G005410.9	Barley	mitochondrion	17.9	8.39
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	17.05	5.75

Protein Annotations

MapMan:35.2	UniProt:A0A287UXW9	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G082930	EnsemblPlants:HORVU6Hr1G082930.1
InterPro:IPR008974	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI000B474885	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:550140009..550143359

Molecular Weight (calculated)

38211.8 Da

IEP (calculated)

7.993

GRAVY (calculated)

-0.184

Length

352 amino acids

Sequence
(BLAST)

001: MGRKWKSTAH GKTPTSEGRP CRKSVAAPSP VAAEAPEPAA AFNAMEPHHQ RKGGPGPLKQ ARSAGAVSLA KEKVVKLDFD VSMRVLNCDM CHGLLKAPIF
101: QCSLLRHVAC RSCSECHGGK CRPCADLATT AVYVQSSYLD TLFGHIKLKE AWPYKKYGCT SSIPVGEGDP AAAWELESCW FRPCPFKGSP ADLVRHLTGR
201: HALAAHKFTY GQDYIYDSDE MDSSLVYADE MGSWTGCEEL LVGEDGGVFH LMADLTADFE QFPFPFVALL CVRNSAAAAA AAGPVYSYSV AAVDAPPAER
301: RKLKPEIKEV VVGPDWKMKR DCFRLFPAML REGKSVLVRI CISKAESSSG SC

Best Arabidopsis Sequence Match ( AT1G66630.1 )
(BLAST)

001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.