Factsheet for HORVU6Hr1G082920.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G324500.1	Wheat	plastid	84.07	92.26
TraesCS6B01G375600.1	Wheat	plastid	81.72	90.2
TraesCS6A01G343600.1	Wheat	plastid	81.46	89.91
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	10.71	31.3
HORVU2Hr1G020530.1	Barley	extracellular	10.71	31.3
HORVU4Hr1G016950.1	Barley	plastid	24.8	31.05
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	10.18	29.77
EES02585	Sorghum	cytosol, nucleus, plastid	22.98	27.08
HORVU3Hr1G005430.1	Barley	plastid	17.49	26.59
HORVU1Hr1G023820.1	Barley	extracellular	12.53	25.95
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	20.89	25.64
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	21.93	25.45
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	22.98	25.0
HORVU4Hr1G069550.1	Barley	plastid	12.27	24.1
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	19.32	23.49
OQU86433	Sorghum	cytosol, nucleus, plastid	21.41	22.97
OQU88982	Sorghum	plastid	14.36	21.83
OQU86440	Sorghum	nucleus, plasma membrane, plastid	19.06	21.73
HORVU3Hr1G005290.2	Barley	plastid	19.84	20.32
HORVU3Hr1G005470.1	Barley	plastid	15.93	19.18
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	15.67	16.67
HORVU3Hr1G005410.9	Barley	mitochondrion	21.67	11.05
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	21.93	8.05

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A287UXZ7	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU6Hr1G082920	EnsemblPlants:HORVU6Hr1G082920.1
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000B488ED5	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287UXZ7]

Coordinates

chrchr6H:-:550079379..550081036

Molecular Weight (calculated)

41357.4 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.247

Length

383 amino acids

Sequence
(BLAST)

001: MGGKRKSTGD VKTPSTVGRR PGRPRKNTPP EAIRRPGRPR KSVPGVEVPV ARGPASAQTL APSRSEHEED GNGGLLELAR GAAAIAAAEE EEEQVKLRCD
101: LCHGPLRPPI YQVIRRDAQD VCPLSIRLPW SWPRFDWLID EFASRWPQCT RVQHVACGDC GAGECRPCGG DPAAVFVHNA QLDALFGYIK VPCAFRKFGC
201: ASSVAYRDMA SHEAACAWAP CACAECGYKG PPSGLLHHLT ELSGRHAWTA HRITYGMDHQ FAVPVPELSD QQCEDRGLLV AEDGALFLVA VGGVSDVRRV
301: TVVCVRGNVG TGPVYSSSVE VAGPDEARRL KLENKVAASC SAPVEFDVLA QPECDTVPVY PEMLHGEELH LCIRIGKTKI ICS

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.