Factsheet for HORVU4Hr1G069550.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G023820.1	Barley	extracellular	29.23	30.81
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	44.1	27.65
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	45.13	26.91
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	44.62	26.28
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	42.05	26.2
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	43.59	26.15
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	15.9	23.66
HORVU2Hr1G020530.1	Barley	extracellular	15.38	22.9
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	14.87	22.14
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	37.95	20.56
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	34.36	20.3
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	31.79	19.87
HORVU3Hr1G005430.1	Barley	plastid	25.64	19.84
HORVU3Hr1G005290.2	Barley	plastid	36.92	19.25
EES00397	Sorghum	plastid	28.21	17.08
HORVU4Hr1G016950.1	Barley	plastid	26.67	16.99
HORVU3Hr1G005470.1	Barley	plastid	27.69	16.98
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	26.67	16.51
HORVU6Hr1G082920.1	Barley	plastid	24.1	12.27
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	18.46	10.23
Os01t0122701-00	Rice	plastid	4.62	8.91
HORVU3Hr1G005410.9	Barley	mitochondrion	31.28	8.12
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	32.31	6.03

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A287PIT2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0046872
EnsemblPlantsGene:HORVU4Hr1G069550	EnsemblPlants:HORVU4Hr1G069550.1	InterPro:IPR008974	InterPro:IPR013083	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33
InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000B47343F	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:571008567..571010566

Molecular Weight (calculated)

20287.4 Da

IEP (calculated)

8.743

GRAVY (calculated)

0.002

Length

195 amino acids

Sequence
(BLAST)

001: MAFLPSHTFK TANIQFSRRF TGGLSDLCVC SAITAGTRPA AAAWPCCPAN GAGCAVRTAG PQKIWAPCGR PRGTPPGPAL DVPYHEAVDH RSVCPHAPCD
101: STEPGCGFVG PPQELASHLA VLHSVPVHIV QYGRVSRLRV PVVSGPQHQQ LLVGEEDGHT FLLTVGALGA ASAAMSVVRV GRQGQLSRGS RARCG

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.