Factsheet for TraesCS3D01G066200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	85.63	90.03
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	90.21	89.12
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	83.18	86.9
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	62.69	63.08
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	58.41	58.41
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	57.49	57.67
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	56.27	56.79
HORVU1Hr1G023820.1	Barley	extracellular	31.19	55.14
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	44.34	48.33
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	47.09	47.83
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	46.18	47.63
HORVU4Hr1G069550.1	Barley	plastid	26.91	45.13
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	18.04	44.03
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	34.25	40.58
Os01t0122701-00	Rice	plastid	11.93	38.61
EES00397	Sorghum	plastid	37.61	38.2
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	27.52	38.14
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	40.06	36.39
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	35.17	36.16
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.86	36.08
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.11	33.44
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	31.19	32.9
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	32.11	28.77
TraesCS3D01G512700.1	Wheat	cytosol	30.58	27.86
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.99	26.23
TraesCS6D01G324500.1	Wheat	plastid	24.46	22.92
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	34.25	22.0
TraesCS7D01G107300.1	Wheat	nucleus	28.13	19.05
TraesCS3D01G017300.1	Wheat	plastid	37.31	18.21
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	36.7	17.67
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.83	17.67
TraesCS7D01G071600.1	Wheat	cytosol	30.58	14.79
TraesCS1D01G333100.2	Wheat	nucleus	34.56	14.0
TraesCS3D01G017400.1	Wheat	plastid	39.76	12.6

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G066200	EnsemblPlants:TraesCS3D01G066200.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:29307996..29309219

Molecular Weight (calculated)

33768.7 Da

IEP (calculated)

6.761

GRAVY (calculated)

0.084

Length

327 amino acids

Sequence
(BLAST)

001: MQGAGDEGGN RGSPSTMEEA LGIAKKARLE ELPNGHVKQE EIGVHHAVGG DDGGAIVPAE AGHGSRVELA VKIDMSVLHC PLCTLPFKPP VFQCNKGGHL
101: ACGGCVALLP GGQCRACEDG GRFFHPCPAL DAVVSSTKVE CTNAGCQTYV PYHEAADHRS ACPHAPCACT EPGCGFVGAP QALAGHLADL HSVPVRTVQY
201: GRVSQVPVSG PRQLLVGEED GRAFLLTVGA LGAAAAAVSV VCVRASAATQ PRFSCKMWVS LPQPASGGRS DMVLVDIQVR SSATPGAVVA VNEPTFLALP
301: RMYMVPVAGD AASMEVPLNI RIDKISR

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.