Factsheet for TraesCS3D01G017000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	85.21	87.11
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	83.84	85.71
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	82.74	85.55
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	40.0	61.86
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	51.23	58.8
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	48.77	56.33
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	46.3	53.82
TraesCS3D01G512700.1	Wheat	cytosol	37.81	38.44
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	34.52	37.39
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	37.26	37.06
EES00395	Sorghum	cytosol, nucleus, plastid	33.15	35.38
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	30.14	33.64
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	29.32	32.92
KXG32022	Sorghum	nucleus	30.14	32.64
KXG32016	Sorghum	cytosol	28.49	32.3
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	28.77	32.11
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	27.67	30.98
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	26.85	30.91
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	23.01	30.43
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	26.03	30.35
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	26.85	30.25
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	26.03	29.5
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	23.84	29.0
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	23.29	27.42
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	9.32	25.37
TraesCS7D01G071600.1	Wheat	cytosol	45.75	24.7
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	20.27	22.84
TraesCS6D01G324500.1	Wheat	plastid	18.9	19.77
TraesCS7D01G107300.1	Wheat	nucleus	23.01	17.39
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	21.92	15.53
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	21.64	15.52
TraesCS3D01G017300.1	Wheat	plastid	27.95	15.22
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	23.29	12.52
TraesCS1D01G333100.2	Wheat	nucleus	22.19	10.04
TraesCS3D01G017400.1	Wheat	plastid	24.38	8.62

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G017000	EnsemblPlants:TraesCS3D01G017000.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:5856821..5858004

Molecular Weight (calculated)

38664.4 Da

IEP (calculated)

6.736

GRAVY (calculated)

-0.143

Length

365 amino acids

Sequence
(BLAST)

001: MAGQDKRCLP SMPACNGEHG GKKARHQALV PVVKQEPRQE EEEEEEEWEE GELTSHGGSS GSAAASEALV GAAPAPAPAP PQIDVRMDMA LLHCHACFLP
101: LKPRVFKCEA GHVVCGYCRG AHGEACGRAD THCPELDAVV GATKVPCAYR DFGCDRFLVY HGAAEHKRVC PWMPCSCPQP GCAFLGPPAA LLDHCSAEHS
201: RPIIQVRYGR PWTLSLPLAQ RWHVVVGQED RSVFLVSLAD LGVAATAVSL LCVRPDGAAA LPSAPHFWCK LSVEHPRGDK DEMVMMASAV GSSPLSAGPP
301: VPGQGMFLAV PHELMSGDVL AISVRIDQLQ PPPPPPAAST AVAARAPAPP PPPHASARTT TRRLQ

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.