Factsheet for TraesCS3D01G017300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G028600.1	Wheat	plastid	91.19	88.29
TraesCSU01G166800.1	Wheat	plastid	90.3	87.43
HORVU3Hr1G005410.9	Barley	mitochondrion	74.63	66.58
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	44.93	59.14
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	48.81	48.16
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	8.51	42.54
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	18.96	42.33
TraesCS3D01G017400.1	Wheat	plastid	63.73	41.38
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	18.81	39.75
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	18.81	39.13
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	18.06	38.66
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	15.82	38.41
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	18.36	37.61
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	18.21	37.31
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	17.46	36.11
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	17.31	35.69
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	16.72	34.36
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	11.19	31.78
EES00397	Sorghum	plastid	14.78	30.75
Os01t0122701-00	Rice	plastid	4.63	30.69
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	14.48	30.5
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	14.03	29.75
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	13.58	29.35
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	13.28	28.34
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	15.22	27.95
TraesCS6D01G324500.1	Wheat	plastid	12.24	23.5
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	10.9	22.53
TraesCS3D01G512700.1	Wheat	cytosol	11.79	22.01
TraesCS7D01G107300.1	Wheat	nucleus	15.52	21.53
TraesCS1D01G333100.2	Wheat	nucleus	25.22	20.94
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	14.48	18.84
TraesCS7D01G071600.1	Wheat	cytosol	13.73	13.61

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G017300	EnsemblPlants:TraesCS3D01G017300.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:+:5869978..5873119

Molecular Weight (calculated)

72281.9 Da

IEP (calculated)

7.241

GRAVY (calculated)

-0.111

Length

670 amino acids

Sequence
(BLAST)

001: MRSNPATPAN PSGSRKRGHY NSANKSRRKG DTAYRCSPHL IPPMMKLLSD EQRGFVRKIG FGSLLSMADF EMDRALTLWL IDRFSCDTEA LEFEGDVSVP
101: VRPLVASVLG IPSGPIQVVA GLHVGDALRT RHRCLKGKNA EKLAEEMRGM TEEEPFCMAF MMVILAIYLA PNTTKLVNRY LFGAAQQVGS LKQMDWCGFV
201: ADYLFRGIRK FKESEAPFVF VKGCVHILNV IYVDLVKHAA FEVPNGFPRL GVVTTEHNKW VASHPFGSLL VRRIEESVYA PVLNNMGNGS IVEGGTCADS
301: DTNTDALANQ FAITVTHQNN PHPISAYPGP ARTTPDVTSL AGVEHVALET SARSAGFPRS REQLQSAGPS SPCSAQIAEK TQLAPEATLG RNRGSPKDDR
401: TPERARVELP NSGQVKRAGE GTIRMDMSLL SCRVCYHPVK PPVFQCNVGH LACGTCLAEL PGEQCPICEH GGGFSRCPVM DDVVLSSEMK CSYDGCQSYV
501: PYHELDGHQR VCPHAPCFCM EPGCGFCGPP PALLGHLSAV HSVPVQKVQY GNVHRLRLSE AQCLLHAEED DSVFLLAVGA LGMATVVSAV CICAGASLEP
601: RHAVKLRANG PPPPSSAAGS ILLDTKAVTN SNRPGEVAVE ELPSFLMVPP AYLAGSGASE VSLDVRIDRV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.