Factsheet for TraesCS3D01G512700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G505400.1	Wheat	cytosol	96.94	96.94
TraesCS3B01G572900.1	Wheat	cytosol	88.86	88.12
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	32.31	49.15
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	37.05	42.09
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	37.05	41.82
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	33.7	38.53
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	38.44	37.81
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	27.86	30.58
KXG32022	Sorghum	nucleus	28.13	29.97
EES00395	Sorghum	cytosol, nucleus, plastid	28.41	29.82
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	27.02	29.66
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	25.63	29.39
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	24.51	29.33
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	27.3	29.08
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	29.53	28.88
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	22.01	28.62
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	25.91	28.53
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	25.63	28.31
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	25.07	27.78
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	24.51	27.76
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	10.03	26.87
KXG32016	Sorghum	cytosol	23.68	26.4
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	23.4	26.09
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	21.45	24.84
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	19.22	21.3
TraesCS6D01G324500.1	Wheat	plastid	18.66	19.2
TraesCS7D01G071600.1	Wheat	cytosol	34.26	18.2
TraesCS7D01G107300.1	Wheat	nucleus	22.28	16.56
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	22.01	15.34
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	20.33	14.34
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	22.84	12.08
TraesCS3D01G017300.1	Wheat	plastid	22.01	11.79
TraesCS1D01G333100.2	Wheat	nucleus	21.45	9.54
TraesCS3D01G017400.1	Wheat	plastid	20.89	7.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G512700	EnsemblPlants:TraesCS3D01G512700.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:597096170..597097352

Molecular Weight (calculated)

36928.5 Da

IEP (calculated)

7.697

GRAVY (calculated)

0.069

Length

359 amino acids

Sequence
(BLAST)

001: MGLGGGGGDG ILAVVPMEAI PMAEPQIVAG GKTVGLRADL LDCHNCRLPL KPPIFKCDAE HLVCSSCRGV HGEACGGRAA VHSALADIFA AAATVPCGYE
101: RYGCDAGGVV YHEAADHRRA CQHAPCCCPD RAGAAGIGGC GFVGSRQDLL DHISGPDHSR PIIVVRYGQP WNLSLPLSRR WHILVGEEDK AVAAAAGADR
201: HRNLFLVSLG ERGATTAVSL VCVRADGTAP SAPQFACKLA VESDGCRLTL ESPLVCSSSL SGGLPTEVKC LPVPKDFLSG DSVPLSIHIE KLLALPAPPL
301: GLGVSPAATS PVAATPPPCP AATIPPSRPS SGSSDNVAVK TVITDQSYKK RKSANPRKL

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.