Factsheet for TraesCS3D01G017400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G028500.1	Wheat	plastid	97.58	97.58
TraesCSU01G166900.1	Wheat	plasma membrane	86.14	93.48
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	76.07	75.19
TraesCS3D01G017300.1	Wheat	plastid	41.38	63.73
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	30.14	61.1
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	35.85	54.49
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	5.91	45.52
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	12.6	43.33
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	12.6	41.53
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	12.6	39.76
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	12.4	39.75
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	12.02	39.12
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	10.37	38.77
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	11.82	37.31
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	11.05	35.08
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	10.95	34.88
Os01t0122701-00	Rice	plastid	3.39	34.65
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	10.85	34.36
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	7.27	31.78
EES00397	Sorghum	plastid	9.59	30.75
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	8.72	29.03
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	8.91	28.93
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	8.62	28.16
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	8.14	26.75
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	8.62	24.38
TraesCS6D01G324500.1	Wheat	plastid	7.95	23.5
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	6.98	22.22
TraesCS7D01G107300.1	Wheat	nucleus	10.17	21.74
TraesCS1D01G333100.2	Wheat	nucleus	16.57	21.19
TraesCS3D01G512700.1	Wheat	cytosol	7.27	20.89
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	9.5	19.03
TraesCS7D01G071600.1	Wheat	cytosol	8.43	12.87

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G017400	EnsemblPlants:TraesCS3D01G017400.1	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:5875786..5880556

Molecular Weight (calculated)

111087.0 Da

IEP (calculated)

6.623

GRAVY (calculated)

-0.029

Length

1032 amino acids

Sequence
(BLAST)

0001: MGSSPAARSN PSRTGKRGDA MDGGNPPSRS AKKSSALLPK GWSGTASYRC SPHLIPRIVG LLSEEQKGFV RKIGFGSLLS MADFEINKAL TLWLVGRFSC
0101: ETEALEFEGG VSIPVRPLVK SVLGIPSGPI PVVQSPYSHF SSTKVRKAKE LAEEMCGITE EEPFCTAFMM VILAIYLAPN TTMLVNRSLL GAAQKVGSLR
0201: QMDWCGFVAD YLIKGLMEFK ESDAPFVLLK GCVHILSVIF IDHVKHAEFQ VPNGFPRLRV VTTAHNKWVA SHPFGSLLVR RLEESVYAPV LNNGNGNIVE
0301: GGECADSDTN TDALANLPAT DNDQNNQHPV SAGPASLSIV VALETSAQSA GTNHLHGAMG SIPAAHANPS SNGKQGSAMD GGSPPSRSAK RPRKSGSAVY
0401: RCSPRLIPQI VELLSEEQKG FVRKIGFGSL LSMADFEMNK ALTLWLVGKF SCDTNALEFG GGLSIPVRPL VKSVLGIPSG PIQVVQGLHV DYGLFSQYCT
0501: VKFKNARKLA EEMCSITEEE PFCIAFMMTI LAIYLAPNTT VLVNRSFLGA AQQVGSLKQM DWCGFVADYL FKGIREFKES DAPFGCLKGC VHILSVIFID
0601: LVKHAAFEVP NGFPRLGFVT TEHNKWVASH PFGSLLVRRL EESVYAPVLN NGNGNIVQVG ECADSDTDTD ALSNQSATDN DQNNQHPVSP GPGSLLIVTG
0701: LETSARSAEH IIFPRSGEQL QSAGPSSEPF SAQILNGLEV LAAAAESRNR DSPSTMEKHD RSAKRARVEL PNNGQMVRDG EATIRMDMSL FSCRVCSHPV
0801: KPPVFQCNVG HLACGRCLAE LPDEQCQMCE HGGDFSRCPV MDDVVLSSTM KCSHDGCHIY VPYHELDDHQ STCPHGPCFC TETGCSFAGA PAALLGHLAA
0901: LHSVPVHKVH YGSVHQLRVS EPRFLLHAEE DDSAFLLAVG VLGMATVVSV VCLRAGAYPE PRYAVKLWAN GPPLPSSAAG SILLDMQAVT SISRPGEVAV
1001: EELPSFLMVP PAYLVDCGAY KEVSLDVRID RM

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.