Factsheet for TraesCS3A01G028500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G017400.1	Wheat	plastid	97.58	97.58
TraesCSU01G166900.1	Wheat	plasma membrane	85.85	93.17
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	75.97	75.1
TraesCS3A01G028600.1	Wheat	plastid	40.99	61.13
TraesCS3A01G028000.1	Wheat	plasma membrane	31.49	50.08
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	13.37	46.62
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	12.79	39.88
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	11.34	35.45
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	10.95	34.45
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	11.05	34.44
Os01t0122701-00	Rice	plastid	3.29	33.66
TraesCS3A01G065800.1	Wheat	cytosol	6.3	33.16
EES00397	Sorghum	plastid	9.3	29.81
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	6.3	29.28
TraesCS3A01G065900.1	Wheat	cytosol	6.49	29.26
TraesCS7A01G138000.1	Wheat	nucleus	8.91	29.11
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	8.91	29.02
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	8.53	28.76
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	8.82	28.44
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	8.72	25.79
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	8.33	24.36
TraesCS6A01G343600.1	Wheat	plastid	7.66	22.77
TraesCS2A01G361500.1	Wheat	cytosol	6.69	21.84
TraesCS3A01G505400.1	Wheat	cytosol	7.17	20.61
TraesCS3A01G020900.1	Wheat	cytosol	5.52	19.13
TraesCS3A01G505500.1	Wheat	cytosol	5.81	18.81
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	9.01	18.24

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G028500	EnsemblPlants:TraesCS3A01G028500.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:15287628..15292380

Molecular Weight (calculated)

110958.0 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.051

Length

1032 amino acids

Sequence
(BLAST)

0001: MGSSPAARSN PSRTGKRGDA VGGGNPPSRS AKKSSALLPK GWSGTASYRC SPHLIPQIVG LLSEEQKGFV RKIGFGSLLS MADFEINKAL TLWLVGRFSC
0101: ETEALEFEGG VSIPVRPLVK SILGIPSGPI PVVQSPYSHF SSTKVRKAKE LAEEMCGITE EEPFCTAFMM VILAIYLAPN TTMLVNRSLL GAAQKVGNLK
0201: QMDWCGFVAD YLLKGLMEFK ESDAPFVLLK GCVHILSVIF IDHVKHAEFQ VPNGFPRLRV VSTAHNKWVA SHPFGSLLVR RLEESVYAPV LNNGNGNIVE
0301: GGECADSDTN TDALANLPAT DNDQNNQHPV SAGPASLSIV VALETSAQSA GTNHLHGAMG SNPAAHANPS SNGKQGSAMD GGSPPSRSAK RPRKSGSAVY
0401: RCSPRLIPQI VELLSEEQKG FVRKIGFGSL LSMADFEMNK ALTLWLVGKF SCDTNALEFG GGLSIPVRPL VKSVLGIPSG PIQVVQGLHV DYGLFSQYCS
0501: VKFKNARKLA EEMCSITEEE PFCIAFMMTI LAIYLAPNTT VLVNRSFLGA AQQVSSLKQM DWCGFVADYL FKGIREFKES DAPFGCLKGC VHILSVIFID
0601: LVKHAAFEVP NRFPRLGFVT TEHNKWVASH PFGSLLVRRL EESVYAPVLN NGNGNIVEGG ECADSDTDTD ALSNQSATDN DQNNQHPVSP GPGSLLIVTG
0701: LETSARSAEH IIFPRSGEQL QSAGPSSEPY SAQIPNGLEV LAAAAESRNR DSPSTMEKHD RSAKRARVEP PNSGQMVRAG EATIRMDMSL FSCRVCSHPV
0801: KPPVFQCNVG HLACGRCLAE LPDEQCQMCE HGGDFSRCPV MDDVVLSSTM KCSHEGCHIY VPYHELDDHQ STCPHGPCFC TETGCSFAGA PAALLGHLAA
0901: LHSMPVHKVH YGSVHQLRVS EPRFLLHAEE DDSAFLLAVG VLGMATVASV VCLRAGAYPE PRYAVKLWAN GPPLPSSAAG SILLDMQAVT SIARPGEVAV
1001: EELPSFLMVP PAYLVDCGAY KEVSLDVRID RM

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.