Factsheet for TraesCS5A01G435500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	59.8	59.0
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	58.11	56.77
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	58.78	56.13
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	24.32	53.73
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	50.68	45.32
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	46.28	41.39
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	45.27	40.85
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	44.26	39.7
Os01t0122701-00	Rice	plastid	13.51	39.6
HORVU3Hr1G005470.1	Barley	plastid	40.2	37.42
EES00397	Sorghum	plastid	37.5	34.47
TraesCS3A01G065800.1	Wheat	cytosol	21.62	32.65
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	32.77	30.6
TraesCS7A01G138000.1	Wheat	nucleus	31.76	29.75
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	31.42	29.06
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	29.73	28.76
TraesCS3A01G065900.1	Wheat	cytosol	21.96	28.38
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	21.28	28.38
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	31.76	26.93
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	30.41	25.5
TraesCS3A01G505400.1	Wheat	cytosol	30.07	24.79
TraesCS2A01G361500.1	Wheat	cytosol	24.32	22.78
TraesCS3A01G505500.1	Wheat	cytosol	23.31	21.63
TraesCS6A01G343600.1	Wheat	plastid	24.66	21.04
TraesCS3A01G028000.1	Wheat	plasma membrane	43.92	20.03
TraesCS3A01G028600.1	Wheat	plastid	43.92	18.79
TraesCS3A01G020900.1	Wheat	cytosol	18.58	18.46
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	30.41	17.65
TraesCS3A01G028500.1	Wheat	plastid	46.62	13.37

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS5A01G435500	EnsemblPlants:TraesCS5A01G435500.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:618944748..618945741

Molecular Weight (calculated)

31593.0 Da

IEP (calculated)

7.234

GRAVY (calculated)

-0.072

Length

296 amino acids

Sequence
(BLAST)

001: MELELPNGPV KREMVVHEAA VRGGGGGGHG GDMRMRMDVT VRINADMFHC PICFRPFKPP VFQCEGGHLA CGSCVVELPW QQCGKCEHGG DFHACPLLDT
101: FVSSASVQCD HHGCGRYVTY HEAGQHRSAC PHAPCSCALP GCGFLGPPPA LLLHLNALHS VPVHDVPYSK ALLLQVQASP EPRHLLRGEE DGRAFLLVTG
201: AHGPGAAVTV SVVCIRAAAS PSPRYSVKLW ANGPPPPANR KMDTIWADFE ATSSTSPGTV ALEELTSFLT VPPRYLHGAG ASKELPLHVR IDKITS

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.