Factsheet for TraesCSU01G046200.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	93.07	94.0
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	96.04	93.87
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	38.61	87.31
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	56.77	58.11
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	54.46	53.57
HORVU3Hr1G005470.1	Barley	plastid	53.8	51.26
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	47.19	42.69
TraesCSU01G043600.1	Wheat	nucleus	46.86	42.39
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	44.88	40.96
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	40.26	39.87
TraesCSU01G207000.1	Wheat	extracellular, plastid	16.17	38.89
TraesCSU01G206900.1	Wheat	cytosol	19.8	37.74
EES00397	Sorghum	plastid	36.3	34.16
Os01t0122701-00	Rice	plastid	11.22	33.66
TraesCSU01G043700.1	Wheat	cytosol	30.36	29.11
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	20.79	28.38
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	20.79	28.38
TraesCSU01G046100.1	Wheat	cytosol	27.06	26.03
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	29.04	24.65
TraesCSU01G040400.1	Wheat	cytosol	20.13	20.47
TraesCSU01G166800.1	Wheat	plastid	41.25	18.06
TraesCSU01G166900.1	Wheat	plasma membrane	41.25	13.14

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G046200	EnsemblPlants:TraesCSU01G046200.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:36299082..36300120

Molecular Weight (calculated)

32256.1 Da

IEP (calculated)

7.948

GRAVY (calculated)

-0.067

Length

303 amino acids

Sequence
(BLAST)

001: MEMEMELPNL NVPVKKEIVV HNPGAQGRGG GGGAITEASE HGTRRTEATV RIEASMLDCP ICFSPFKPPV FQCKGGHLAC GSCVAKLPWK QCQRCDLGGD
101: FHGCPFVDAF VSSARMKCDH HGCGRQVTYH KLDDHKSACP LAPCKCPVSG CGFEGPPPAL RHHLSAVHSM PVHAVQYGKV LQLEVPVSEP RRLLFAEEDG
201: RAFLVVGGSL GLGVPIALSV VCIRAGASPP PHYVAKVWAN GPPAAANDRT DTVRADIQVT SSKEPGAVAV EELTFLTVPH KLLAGAGPSR TVSLHLRIDK
301: ITY

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.