Factsheet for TraesCSU01G045700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G043600.1	Wheat	nucleus	98.81	98.81
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	93.43	94.28
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	84.18	86.24
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	84.48	85.76
TraesCSU01G207000.1	Wheat	extracellular, plastid	31.34	83.33
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	69.55	76.14
TraesCSU01G206900.1	Wheat	cytosol	33.73	71.07
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	67.76	68.79
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	67.16	67.77
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	42.69	47.19
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	39.7	43.18
Os01t0122701-00	Rice	plastid	11.64	38.61
EES00397	Sorghum	plastid	36.12	37.58
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	22.69	34.23
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	22.69	34.23
TraesCSU01G046100.1	Wheat	cytosol	29.55	31.43
TraesCSU01G043700.1	Wheat	cytosol	29.55	31.33
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	30.45	28.57
TraesCSU01G040400.1	Wheat	cytosol	18.81	21.14
TraesCSU01G166800.1	Wheat	plastid	37.31	18.06
TraesCSU01G166900.1	Wheat	plasma membrane	35.82	12.62

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G045700	EnsemblPlants:TraesCSU01G045700.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:35795056..35796194

Molecular Weight (calculated)

34844.1 Da

IEP (calculated)

7.190

GRAVY (calculated)

0.081

Length

335 amino acids

Sequence
(BLAST)

001: MQGAAVAVEG RSRASPDKAD EESAKKPRLD LPDAHSVKQE LVAPDAAGGG DGGAIVAAAS AFGPREELAV RIDKRLLHCP LCTLPFKPPV FQCKAGHLAC
101: GGCVAELPCG QCKACVDGAG FFDPCPALDA VVSSTRTECP NPGCKRYVTY HEVPEHQTAC PHAPCRCTEP GCGYVGAPQA LAGHLHTVHS VPVRAVQYGK
201: ASQLRVPVSA PRLVLLGDDD NRVFLLTVGA LGAGVTAVSV VCARASAATR PRFACKMWVN LEPAKCGKED MVLVDMHMRS SSSPGAVVAA GEPTFLMVPP
301: MYLVPAAAAG DGAASMEVPL HIRIDKLSPW SDALV

Best Arabidopsis Sequence Match ( AT1G66630.1 )
(BLAST)

001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.