Factsheet for TraesCS3A01G029500.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	86.36	87.16
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	87.27	85.46
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	85.15	84.64
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	85.76	84.48
TraesCSU01G043600.1	Wheat	nucleus	85.76	84.48
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	68.48	68.48
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	64.85	64.65
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	63.64	64.02
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	57.58	57.4
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	39.7	44.26
Os01t0122701-00	Rice	plastid	11.82	38.61
EES00397	Sorghum	plastid	36.67	37.58
TraesCS3A01G065800.1	Wheat	cytosol	20.0	33.67
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	31.82	33.12
TraesCS7A01G138000.1	Wheat	nucleus	31.21	32.59
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	21.52	31.98
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	30.91	31.88
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	29.09	31.37
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	30.91	28.9
TraesCS2A01G361500.1	Wheat	cytosol	27.27	28.48
TraesCS3A01G065900.1	Wheat	cytosol	19.39	27.95
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	29.09	27.51
TraesCS3A01G505400.1	Wheat	cytosol	29.09	26.74
TraesCS3A01G505500.1	Wheat	cytosol	25.45	26.33
TraesCS6A01G343600.1	Wheat	plastid	23.64	22.48
TraesCS3A01G020900.1	Wheat	cytosol	18.18	20.13
TraesCS3A01G028000.1	Wheat	plasma membrane	35.45	18.03
TraesCS3A01G028600.1	Wheat	plastid	36.67	17.49
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	26.36	17.06
TraesCS3A01G028500.1	Wheat	plastid	35.45	11.34

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G029500	EnsemblPlants:TraesCS3A01G029500.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:15603670..15604754

Molecular Weight (calculated)

34546.8 Da

IEP (calculated)

7.157

GRAVY (calculated)

0.088

Length

330 amino acids

Sequence
(BLAST)

001: MQGAAAEGRS RASPDQADEE SAKKPRLDLP DARVKQELVA GGGEGSPIVA APAPYSPREE LAVRIDKRLL HCHLCTLPFK PPVFQCKAGH LACGVCVAQL
101: PCGQCKACVD GGGFFDPCPA LDAVVSSTRI ECPNPGCTRY VTYHEVADHQ TACPHAPCRC TEPGCGYVGA PQALAGHLHT VHSVPVRALQ YGKASQLRLP
201: VSTPRLVLLG DDDNRVFLLT VGALGAGVTA VSVVCARASA ATRPRFACKM WVNLVAASCG KEDMVLVDMH MRSSSSPGAV VAAGEPTFLM VPPMYLVPAA
301: AAGDGDGAAS MEVPLYIRID KLSPWSDALV

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.