Factsheet for TraesCS3A01G028600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G166800.1	Wheat	plastid	93.93	93.93
TraesCS3D01G017300.1	Wheat	plastid	88.29	91.19
HORVU3Hr1G005410.9	Barley	mitochondrion	74.28	68.44
TraesCS3A01G028000.1	Wheat	plasma membrane	43.06	45.92
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	18.79	43.92
TraesCS3A01G028500.1	Wheat	plastid	61.13	40.99
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	18.35	38.37
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	17.49	36.67
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	16.62	35.06
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	16.33	34.14
TraesCS3A01G065800.1	Wheat	cytosol	9.39	33.16
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	9.97	31.08
Os01t0122701-00	Rice	plastid	4.48	30.69
EES00397	Sorghum	plastid	14.02	30.12
TraesCS7A01G138000.1	Wheat	nucleus	13.44	29.43
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	13.44	29.34
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	13.29	28.75
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	14.16	27.76
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	12.14	27.45
TraesCS3A01G065900.1	Wheat	cytosol	8.96	27.07
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	12.57	24.93
TraesCS6A01G343600.1	Wheat	plastid	12.14	24.21
TraesCS2A01G361500.1	Wheat	cytosol	10.84	23.73
TraesCS3A01G505400.1	Wheat	cytosol	11.42	22.01
TraesCS3A01G505500.1	Wheat	cytosol	10.12	21.94
TraesCS3A01G020900.1	Wheat	cytosol	8.24	19.13
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	13.29	18.04

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFscan:PS50089	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	SUPFAM:SSF57850	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G028600
EnsemblPlants:TraesCS3A01G028600.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

No Description!

Coordinates

chr3A:-:15294755..15297873

Molecular Weight (calculated)

75241.6 Da

IEP (calculated)

7.224

GRAVY (calculated)

-0.083

Length

692 amino acids

Sequence
(BLAST)

001: MRSNPATPAN PSGSRKRGHY NSANKSRRKG DTAYRCSPHL IPPIMKLLSD RQRGFVRKIG FGSLLSMEDF EMDRALTLWL IDRFSCDTEA LEFQGGVSVP
101: VRPLVESVLG IPAGPIQVVA GLHVGDAFRT RYRCLKGKNA EKLAEEMRGM TEEEPFCMAF MMVILAIYLA PNTTKLVNRY LFGAAQQVGS LRQMDWCGFV
201: ADYLFRGIRK FKESEAPFVF VKGCVHILNV IYVDLVKHAA FEVPNGFPRL GVVTTEHNKW VASHPFGSLL VRRLEESVYA PVLNNMGNGS IVKGGTCADS
301: DTNTDALANQ FAITVTHQNN PQPIAAYPGT ARTTPDITSL ASVEHVALET SARSAVYSFN THRVEGSVFL EECVVFPRSR EQLQSAGPSS PYSAQIVEKM
401: QLAPEATLGR NRGSPKDDRT PERARVELPN SGQVKQAGEG TIRMDMSLLS CRVCYHPVKP PVFQCNVGHL ACGTCLAELP GEQCPICEHG GGFSRCPVMD
501: DVVLSSEMKC SYDGCQSYVP YHELDGHQRV CPHAPCFCTE PGCGFCGPPV ALLGHLTAVH SVPVQKVQYG NVHRLRLSEA RCLLHVEEDD SVFLLAVGAV
601: GALDMATVVS AVCICAGASL EPRHAVKLRA NGPPPPSSAA GSILLDLKAV TNSNRPGEVA VEELPSFLMV PPTYLVGSEA SEVSLDVRID RV

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.