Factsheet for TraesCS3A01G030000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	86.71	88.31
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	87.31	87.84
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	87.61	87.09
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	85.2	84.94
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	83.38	84.15
HORVU3Hr1G005290.2	Barley	plastid	82.18	72.73
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	64.65	64.85
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	63.75	63.75
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	41.39	46.28
Os01t0122701-00	Rice	plastid	12.39	40.59
EES00397	Sorghum	plastid	38.67	39.75
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	24.17	36.04
TraesCS3A01G065800.1	Wheat	cytosol	20.24	34.18
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	32.33	33.75
TraesCS7A01G138000.1	Wheat	nucleus	31.72	33.23
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	30.82	31.88
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	28.7	31.05
TraesCS3A01G065900.1	Wheat	cytosol	20.24	29.26
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	31.12	29.18
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	30.21	28.65
TraesCS2A01G361500.1	Wheat	cytosol	25.38	26.58
TraesCS3A01G505400.1	Wheat	cytosol	26.89	24.79
TraesCS3A01G505500.1	Wheat	cytosol	23.26	24.14
TraesCS6A01G343600.1	Wheat	plastid	23.57	22.48
TraesCS3A01G020900.1	Wheat	cytosol	19.94	22.15
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	29.61	19.22
TraesCS3A01G028000.1	Wheat	plasma membrane	32.02	16.33
TraesCS3A01G028600.1	Wheat	plastid	34.14	16.33
TraesCS3A01G028500.1	Wheat	plastid	34.44	11.05

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G030000	EnsemblPlants:TraesCS3A01G030000.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:-:15779149..15780907

Molecular Weight (calculated)

33935.7 Da

IEP (calculated)

7.411

GRAVY (calculated)

0.116

Length

331 amino acids

Sequence
(BLAST)

001: MQGAGAAEGR SRGSPSAMDK PDESAKKARL DLPVGHSVKQ ELVVHDAAAG GGAVVAVAPE HSPRAELAVK IDMCVLHCPL CTLPFKPPVF QCKGGHLACG
101: GCAAQQPSGQ CGACADGCGF FDPCPALDAV VSSTRVQCPN AGCHRYVTYH QAEEHRSACA HAPCRCTEHG CGFVGAASDL AAHLSAAHSV PVRPIHYGKV
201: SRFQVPVSTP RLLLVGDDDG RVFLLTVGAL GAAATAVSVV CARGSAATKP RFTCKMWVNL TASAAANGGK ADIVLVEMQM RSSTSPGAVV AAGEPTFLAV
301: PPVYLVPGAD GGDAMEVPLN VRIDKALPWS D

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.