Factsheet for TraesCSU01G044900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	91.57	91.29
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	87.35	88.15
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	84.64	86.46
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	84.94	85.2
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	82.23	83.23
HORVU3Hr1G005290.2	Barley	plastid	77.41	68.72
TraesCSU01G207000.1	Wheat	extracellular, plastid	25.9	68.25
TraesCSU01G045700.1	Wheat	nucleus, peroxisome, plastid	67.77	67.16
TraesCSU01G043600.1	Wheat	nucleus	67.77	67.16
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	57.23	62.09
TraesCSU01G206900.1	Wheat	cytosol	27.11	56.6
TraesCSU01G046200.1	Wheat	nucleus, plasma membrane, plastid	40.96	44.88
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	39.46	42.53
EES00397	Sorghum	plastid	40.06	41.3
Os01t0122701-00	Rice	plastid	11.75	38.61
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	23.49	35.14
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	23.49	35.14
TraesCSU01G046100.1	Wheat	cytosol	31.02	32.7
TraesCSU01G043700.1	Wheat	cytosol	29.52	31.01
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	31.93	29.69
TraesCSU01G040400.1	Wheat	cytosol	21.08	23.49
TraesCSU01G166800.1	Wheat	plastid	34.94	16.76
TraesCSU01G166900.1	Wheat	plasma membrane	35.24	12.3

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCSU01G044900	EnsemblPlants:TraesCSU01G044900.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:35451270..35452370

Molecular Weight (calculated)

33640.3 Da

IEP (calculated)

6.899

GRAVY (calculated)

0.165

Length

332 amino acids

Sequence
(BLAST)

001: MQGAGAAEGR SRGSPSTMDK ADESAKKARL DLPNGHSVKQ ELVAVAGGDG GAIVAVAEHS PRAELAVKID MCVLHCPLCA LPFKPPVFQC KGGHLACGGC
101: AAQQPSGQCG ACADGCGFFD PCPALDAVVS STRVECPNAG CHMYVTYHEA DEHRSACAHA PCRCAEHGCG FVGAAPDLAG HLGAAHSVPV HAIRYGKVSR
201: LQVPVSTPRL LLVGDGDGRV FVLTVGALGA AATAVSVVCA RGSAATRPRF TCKMWVNLTT SAAADGGKAD IVLVEMQVRS STSPGAVVAA GEPTFLTVPP
301: AYLVPGADGG DGAAAIEVPL SVRIDKIAPW SD

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.