Factsheet for TraesCS3D01G015700.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	88.92	86.79
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	88.31	86.71
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	87.08	86.02
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	86.46	84.64
HORVU3Hr1G005290.2	Barley	plastid	80.0	69.52
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	64.31	63.91
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	63.08	62.69
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	62.77	62.58
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	62.15	62.35
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	58.46	60.7
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	47.08	48.27
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	47.08	47.52
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	39.69	43.0
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	17.54	42.54
EES00397	Sorghum	plastid	40.92	41.3
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	35.08	41.3
Os01t0122701-00	Rice	plastid	12.31	39.6
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	27.69	38.14
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.15	35.13
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	33.85	34.59
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.62	33.76
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	30.77	32.26
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	32.92	29.32
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.0	28.09
TraesCS3D01G512700.1	Wheat	cytosol	28.31	25.63
TraesCS6D01G324500.1	Wheat	plastid	26.15	24.36
TraesCS7D01G107300.1	Wheat	nucleus	30.15	20.29
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	31.69	20.24
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	31.08	19.61
TraesCS3D01G017300.1	Wheat	plastid	35.69	17.31
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	34.77	16.64
TraesCS7D01G071600.1	Wheat	cytosol	32.31	15.53
TraesCS1D01G333100.2	Wheat	nucleus	33.85	13.63
TraesCS3D01G017400.1	Wheat	plastid	35.08	11.05

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G015700	EnsemblPlants:TraesCS3D01G015700.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:5609123..5610211

Molecular Weight (calculated)

33474.2 Da

IEP (calculated)

7.392

GRAVY (calculated)

0.107

Length

325 amino acids

Sequence
(BLAST)

001: MQGAGVEGRS RGSPSATDKA DESAKKARLD LPDGHLVKQE LVAHDAAAGG GAIVAVAERS PRAELAVKID MCVLHCPLCT LPFKPPVFQC KGGHLACGGC
101: AAQQPSGQCG ACADGCGFFD PCPALDAVVS STRVQCPNAG CHRYVTYHEA DEHRSACAHA PCRCAEHGCA FVGAPPDLAA HLSAAHAVPV RAIHYGKVSR
201: LQVPVSTPRL LLVGDDDGRV FLLTVGALGA AATAVSVVCA RGSAATKPRF TCKMWVNLTA NGGKADIVLV EMQVRSSTSP GAVVAAGERT FLAVPPVYLV
301: PGADGGDAME VPLNVRIDKT LPWSD

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.