Factsheet for TraesCS4D01G110300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	87.68	87.68
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	83.33	83.33
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	31.16	64.18
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	56.52	52.0
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	57.97	51.28
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	59.06	50.62
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	55.8	50.0
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	48.19	41.96
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	42.75	36.09
Os01t0122701-00	Rice	plastid	13.04	35.64
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	41.3	35.08
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	40.94	34.88
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	40.94	34.66
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	39.13	34.5
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	40.58	34.25
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	26.09	30.51
EES00397	Sorghum	plastid	34.06	29.19
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.88	27.85
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	31.52	27.36
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	30.07	26.77
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.07	26.43
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	30.43	23.01
TraesCS3D01G512700.1	Wheat	cytosol	28.62	22.01
TraesCS6D01G324500.1	Wheat	plastid	27.54	21.78
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	24.28	20.68
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	36.96	20.04
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	39.86	16.2
TraesCS7D01G107300.1	Wheat	nucleus	28.26	16.15
TraesCS3D01G017300.1	Wheat	plastid	38.41	15.82
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	28.99	15.53
TraesCS1D01G333100.2	Wheat	nucleus	40.22	13.75
TraesCS7D01G071600.1	Wheat	cytosol	30.43	12.43
TraesCS3D01G017400.1	Wheat	plastid	38.77	10.37

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS4D01G110300	EnsemblPlants:TraesCS4D01G110300.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:90926162..90927074

Molecular Weight (calculated)

30294.1 Da

IEP (calculated)

6.306

GRAVY (calculated)

-0.029

Length

276 amino acids

Sequence
(BLAST)

001: MVVHEEGEIM QTEQDPTMEL SKVSMDLTVL HCPLCLRPLT PPVYECKGGH LACADCRVEC PENQRQCQKC ERGGGFDVRN MMVDSVLSSV RVECPHEGCG
101: LYVTYHKLAD HQSVCLLAPC KCPVPVCGYE GPPPVLYHHI STTHPMPVHR IQYGKVLQLQ VPLSEPRLLL FAEEDRHAFF LVGGVLDIRA PIAMSVVCIR
201: AGASPLPHYV AKLWANGPPG EPKGTTDAVK VEMEVTSSKD PGDIDVQELT FLTVPPKLMA GAKLVSLHIQ IDKLTS

Best Arabidopsis Sequence Match ( AT5G37890.1 )
(BLAST)

001: MVGAAILESP GEGIGSNSIL SQKRQLSSSD AAKRDAKKRS TMLMDLEILD CPICYEAFTI PIFQCDNGHL ACSSCCPKLN NKCPACTSPV GHNRCRAMES
101: VLESILIPCP NAKLGCKKNV SYGKELTHEK ECMFSHCACP ALDCNYTSSY KDLYTHYRIT HMEINQINTF ICDIPLSVRM NISKKILIRT EHLTNHLFAV
201: QCFREPYGVY VTVSCIAPSS PELSQYSYAL SYTVDGHTVI YQSPEVKRVL KLSFQTPQEN FMLIPNSLLR GDVLEMRISV KKLNKE

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.