Factsheet for TraesCS3D01G055600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	33.75	81.68
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	33.44	80.92
HORVU2Hr1G020530.1	Barley	extracellular	30.91	74.81
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	25.55	60.45
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	54.57	53.73
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	50.47	53.33
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	41.96	48.19
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	48.27	47.08
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	45.74	46.33
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	47.63	46.18
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	46.37	45.37
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	46.37	45.09
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	45.11	43.73
Os01t0122701-00	Rice	plastid	13.56	42.57
EES00397	Sorghum	plastid	36.91	36.34
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	26.5	35.59
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.81	32.91
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	32.18	32.9
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	31.86	31.76
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	30.91	31.21
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	30.91	26.85
TraesCS3D01G512700.1	Wheat	cytosol	27.76	24.51
TraesCS6D01G324500.1	Wheat	plastid	26.5	24.07
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	23.66	23.15
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	34.7	21.61
TraesCS3D01G017300.1	Wheat	plastid	39.75	18.81
TraesCS7D01G107300.1	Wheat	nucleus	28.08	18.43
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	38.8	18.11
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	29.02	17.86
TraesCS1D01G333100.2	Wheat	nucleus	36.59	14.37
TraesCS7D01G071600.1	Wheat	cytosol	30.28	14.2
TraesCS3D01G017400.1	Wheat	plastid	39.12	12.02

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G055600	EnsemblPlants:TraesCS3D01G055600.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:23076309..23077345

Molecular Weight (calculated)

32721.7 Da

IEP (calculated)

6.711

GRAVY (calculated)

0.142

Length

317 amino acids

Sequence
(BLAST)

001: MQVAAGCEGS PAATEGGDQQ SSKKPRLAAE PLLLHVPVKQ EMVVHQAAGA GGDGAAVVAA DHGSRMEIAV KMDVTLLHCP LCISPLKPPV LQCKGGHVAC
101: GGCLAEPCAE CGGAFDVRSK VMDAVVSSTT AECDHDGCGR YVTYHELDGH RGECPHAPCD CAVPGCGFAG PAPALLGHLT ALHSMPVYNF QYGKVLALQL
201: PASLEPRGLL VGDEDGRAFL MVGGALGSGA AVSAVCVRAE AMLWPRYTLK VWASGPAPAP NRKADTVMAE IEVTSSRVPG AVAVEELAYL AVPPKLLVGA
301: GPSRRMSLKI RIDKFTS

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.