Factsheet for TraesCS3D01G018000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	95.43	95.29
TraesCS3A01G028000.1	Wheat	plasma membrane	88.07	92.14
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	48.6	64.83
TraesCS3D01G017300.1	Wheat	plastid	48.16	48.81
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	8.69	44.03
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	18.41	41.67
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	16.2	39.86
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	18.11	39.3
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	18.11	38.8
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	18.26	38.51
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	17.97	37.31
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	17.67	36.7
TraesCS3D01G017400.1	Wheat	plastid	54.49	35.85
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	16.79	34.97
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	16.64	34.77
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	16.35	34.26
Os01t0122701-00	Rice	plastid	4.57	30.69
EES00397	Sorghum	plastid	14.43	30.43
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	13.55	29.68
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	13.25	28.48
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	9.72	27.97
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	12.96	27.67
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	11.93	25.8
TraesCS6D01G324500.1	Wheat	plastid	12.37	24.07
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	12.52	23.29
TraesCS3D01G512700.1	Wheat	cytosol	12.08	22.84
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	10.31	21.6
TraesCS7D01G107300.1	Wheat	nucleus	13.4	18.84
TraesCS1D01G333100.2	Wheat	nucleus	22.39	18.84
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	14.29	18.84
TraesCS7D01G071600.1	Wheat	cytosol	12.22	12.28

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3D01G018000	EnsemblPlants:TraesCS3D01G018000.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:6062392..6068572

Molecular Weight (calculated)

74310.9 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.033

Length

679 amino acids

Sequence
(BLAST)

001: MDTYSNLPIG SSVRDKNNVH YRCSPHQLPP FMKCLSDKQI GFVRKIGFES ILSMKDFKMD KDLTLWLVDK FNCDTEELEF DGGISIPVRP LVKFVLGIPS
101: GPIKVIEGLH VDDALYKQYT WDTRGKNAME VAEEMCSITE EEPFCIAFMM AILAIYLAPN TSVNVSRSFL GAARQVGNLK QMDWCNLVAD CLFKGIKDYK
201: KSDRLFVHVK GCVHILSVIF IDLAKHPTLI VPDGFPRLSV VTTEMGCFTS KWVVAHPFGS FLPVRCLEES VYAPLRNNMP NGNTVEGVKC SDSHSNTDAL
301: ADQFAITDTD QNNNKHPILA KLGNARTTHN TSSSPIVDNV VLDTPAQSSV AAPSSLTEHI IFPTSGEQLQ SAGPSDEPHS AQIMDSVQVP PDTTVERRRD
401: LLLMMEKDDR SAKKARVELS GSGQVKQAGE VTIKMDMSLL NCSVCSRPIK PPVFECNAGH LACYKCLIGL PYKLCQTCEH GSGFGHIRSL DAIISSLTVK
501: CHHDGCGSYV PYYELDDHQS VCPHVPCFCT ELGCGFVGAP QALLSHLIAL HAMPVHKVHY GQVHQLRLSV PRPRCLLHGQ GDGSVFLLVM GVLGVVSVVC
601: IRAEASSWPQ YAVKLQANGP PPPSSVEGSI LLAMKPTSST RPGEVAVEEL PSFLMVPPTY LVGSGASKEV SLDVRIDKM

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.