Factsheet for TraesCS7D01G440300.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	88.29	90.58
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	90.19	89.91
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	87.34	87.62
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	75.63	75.16
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	54.43	72.88
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	67.09	67.52
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	56.33	48.77
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	41.46	38.87
EES00395	Sorghum	cytosol, nucleus, plastid	41.46	38.3
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	43.04	37.06
TraesCS3D01G512700.1	Wheat	cytosol	42.09	37.05
KXG32022	Sorghum	nucleus	38.61	36.2
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	36.08	34.86
TraesCS3D01G066100.1	Wheat	cytosol, nucleus, plastid	34.18	34.5
TraesCS3D01G015700.1	Wheat	cytosol, nucleus, peroxisome	35.13	34.15
TraesCS3D01G016100.1	Wheat	nucleus, peroxisome, plastid	34.18	33.03
TraesCS3D01G055600.1	Wheat	cytosol, nucleus, peroxisome	32.91	32.81
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	33.23	32.41
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	32.91	32.3
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	32.91	31.9
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	27.85	31.88
KXG32016	Sorghum	cytosol	32.28	31.68
TraesCS3D01G016900.1	Wheat	nucleus, plasma membrane, plastid	30.06	31.67
TraesCS7D01G071600.1	Wheat	cytosol	67.41	31.51
TraesCS7D01G071700.1	Wheat	cytosol, plasma membrane, plastid	12.97	30.6
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	27.53	28.06
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	25.63	25.0
TraesCS6D01G324500.1	Wheat	plastid	24.37	22.06
TraesCS7D01G107300.1	Wheat	nucleus	28.8	18.84
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	27.85	17.09
TraesCS3D01G017900.1	Wheat	cytosol, nucleus, plasma membrane	25.0	15.52
TraesCS3D01G017300.1	Wheat	plastid	29.75	14.03
TraesCS3D01G018000.1	Wheat	nucleus, peroxisome, plasma membrane	28.48	13.25
TraesCS1D01G333100.2	Wheat	nucleus	25.95	10.16
TraesCS3D01G017400.1	Wheat	plastid	28.16	8.62

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7D01G440300	EnsemblPlants:TraesCS7D01G440300.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:560285608..560287413

Molecular Weight (calculated)

33031.7 Da

IEP (calculated)

6.760

GRAVY (calculated)

0.040

Length

316 amino acids

Sequence
(BLAST)

001: MEGGESNGKR ASAEEVKSEP EEGEVLMMLQ DGGEGGGALV AAESMAPAQI DVRMDLTLLH CQGCLLPLKP PVFKCEAAGH VVCYHCRAVH GTICSRASTH
101: CGELDAVVGA AKVPCPYRAF GCERHVVYHE AADHQRACHC APCSCPDPAC AFAGSRAALL DHFAAVHRRP AATVRYGRAR DLGLSVSGCW HALVGEEDGS
201: VFLVSLGPLG AATAVSLVCV RPDGEAAPQF WCKLSVERLG GDNRDRLVLM ASAVSSSALS TGAPAPGQGM FLAVPQELLS GDTLTLTVRI DLIRPAAAAA
301: APKSTTPQPR TARRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.