CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32016	Sorghum	cytosol	55.49	58.07
EES00395	Sorghum	cytosol, nucleus, plastid	47.48	46.78
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	29.08	41.53
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	43.62	40.05
TraesCS7B01G040200.1	Wheat	cytosol	37.39	39.87
TraesCS7A01G138000.1	Wheat	nucleus	37.09	39.56
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	36.8	38.99
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	36.2	38.61
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	25.22	38.29
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	25.22	38.29
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	25.22	38.29
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	35.91	38.17
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	35.31	37.78
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	34.12	37.34
HORVU3Hr1G005430.1	Barley	plastid	27.89	37.3
TraesCS3B01G026900.1	Wheat	nucleus	34.12	35.94
TraesCSU01G046100.1	Wheat	cytosol	33.53	35.87
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	33.23	35.67
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	33.53	35.31
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	32.64	35.03
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	33.83	32.29
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	33.83	31.93
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	33.83	31.93
EES00397	Sorghum	plastid	29.97	31.37
OQU86430	Sorghum	cytosol, nucleus, plastid	23.74	30.3
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	32.64	30.14
KXG32025	Sorghum	cytosol	27.3	29.49
EES00400	Sorghum	cytosol	27.6	28.35
TraesCS3B01G572900.1	Wheat	cytosol	30.27	28.18
TraesCS3D01G512700.1	Wheat	cytosol	29.97	28.13
TraesCS3A01G505400.1	Wheat	cytosol	29.97	28.13
EES02585	Sorghum	cytosol, nucleus, plastid	27.0	28.0
OQU88982	Sorghum	plastid	20.18	26.98
TraesCS2A01G361500.1	Wheat	cytosol	24.63	26.27
OQU86433	Sorghum	cytosol, nucleus, plastid	27.6	26.05
TraesCS3B01G573000.1	Wheat	cytosol	22.85	24.14
TraesCS3A01G505500.1	Wheat	cytosol	22.55	23.82
OQU86440	Sorghum	nucleus, plasma membrane, plastid	23.44	23.51
TraesCS7D01G071600.1	Wheat	cytosol	32.05	15.98

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8070425	UniProt:C5XE62	ProteinID:EES00396.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083
EnsemblPlants:KXG32022	ProteinID:KXG32022	ProteinID:KXG32022.1	ProteinID:OQU86449.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G091800	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0001A84813	RefSeq:XP_002455276.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:8001022..8006405

Molecular Weight (calculated)

35725.6 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.066

Length

337 amino acids

Sequence
(BLAST)

001: MSSQQQQKRV PDQDGEHANG AKRSRALAIP NGEVKQEQRG QGEEEAGQGE QGEGALVAVE QAMEEPQINI RMAVSHLHCH ACVLPLKPPT FECEAGHVVC
101: RACRGSHVQA CAGAGTYVSC AKLDGIVRDA KVACAYEAFG CTSWVVYYEA PDHHRSCRFA PCSCPAPGCG HFTSPARLVE HFFSHHAWNV TEVDYAKPCK
201: LAVPGPEDKL VLVGKADGSV FLVSPCAFGA ATAAVSLVCV RACGDVAAGA PQYTCNLWAE VAGNALLLTS VVASSDLVGG FPATDKVMFL PLPQLLYDES
301: GEPPALMVRI DKVGASTIRS RSPCATPPSS LPRRMLQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.