Factsheet for Os01t0121950-00

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	29.97	46.61
TraesCS7A01G138000.1	Wheat	nucleus	38.15	44.3
TraesCS7B01G040200.1	Wheat	cytosol	38.15	44.3
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	38.15	44.03
KXG32022	Sorghum	nucleus	40.05	43.62
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	37.33	43.49
EES00395	Sorghum	cytosol, nucleus, plastid	40.33	43.27
TraesCSU01G177200.1	Wheat	cytosol, nucleus, plastid	26.16	43.24
TraesCSU01G040300.1	Wheat	cytosol, nucleus, plastid	26.16	43.24
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	26.16	43.24
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	37.6	43.12
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	37.06	43.04
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	39.51	43.03
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	35.69	42.53
TraesCS3B01G026900.1	Wheat	nucleus	36.78	42.19
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	35.97	41.64
HORVU3Hr1G005430.1	Barley	plastid	28.07	40.87
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.06	39.81
TraesCS3D01G016800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	34.06	39.81
TraesCSU01G046100.1	Wheat	cytosol	34.06	39.68
TraesCSU01G050700.1	Wheat	cytosol, nucleus, plastid	37.6	38.66
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	36.78	37.82
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	36.24	37.68
KXG32016	Sorghum	cytosol	32.97	37.58
TraesCS3D01G017000.1	Wheat	cytosol, nucleus, plastid	37.06	37.26
Os01t0122200-01	Rice	cytosol	33.52	36.5
Os01t0122701-00	Rice	plastid	8.72	31.68
TraesCS2A01G361500.1	Wheat	cytosol	25.61	29.75
TraesCS3D01G512700.1	Wheat	cytosol	28.88	29.53
TraesCS3A01G505400.1	Wheat	cytosol	28.61	29.25
TraesCS3B01G572900.1	Wheat	cytosol	28.34	28.73
TraesCS3B01G573000.1	Wheat	cytosol	23.71	27.27
TraesCS3A01G505500.1	Wheat	cytosol	23.43	26.96
Os01t0121900-00	Rice	cytosol	16.89	20.95
TraesCS7D01G071600.1	Wheat	cytosol	34.06	18.49

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A0P0UXN8	ProteinID:BAS70143.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlantsGene:Os01g0121950	EnsemblPlants:Os01t0121950-00	PFAM:PF03145
PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI00039389D9	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

Hypothetical conserved gene. (Os01t0121950-00)

Coordinates

chr1:+:1240943..1242391

Molecular Weight (calculated)

38996.6 Da

IEP (calculated)

6.380

GRAVY (calculated)

-0.168

Length

367 amino acids

Sequence
(BLAST)

001: MTQQLTFGEM ISSDRSQKHL SATQEKGGQL PRPLEWSGDM VEQNKRARAN GEVKQEQQQE EEEEVEEGEV SQEETQRTGA FPLVTMAAME QTEEETQIDV
101: RIAVALLHCH ACLQPLKPPV FKCDEAHIVC SGCRCGHHGQ LCGGAAVYSH CAELDAIVAT AKVPCAHAPY GCSSYVVYAG VADHQRACPC APCSCPEPGC
201: RFRSSPAALP GHLAAGHSWP VAEIAYGKPR KLAVPPPAHV LVGEADRAVF LVSSCAVGAG AAVCVVCVRA NGGGDNAAAV ARYKCKLWVE VPSNDDNMAM
301: MTSMVRSSDL AGGFPAADKG MLLWVPPEML HGVPGGEAAI LSIRIDRAAA ATPKFTTTRA RSQKGMH

Best Arabidopsis Sequence Match ( AT5G62800.2 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGFLIK PANEVQQVTI AQETVMEDPP TSLFKNSVPI
301: REDQIQNAIT NSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.