Factsheet for HORVU7Hr1G101970.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
MultiLoc:	nucleus
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	87.62	87.34
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	81.27	83.12
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	81.27	80.76
HORVU3Hr1G005430.1	Barley	plastid	56.83	71.03
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	41.59	38.87
EES00395	Sorghum	cytosol, nucleus, plastid	40.63	37.43
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	43.49	37.33
KXG32022	Sorghum	nucleus	37.78	35.31
KXG32016	Sorghum	cytosol	32.38	31.68
HORVU2Hr1G020530.1	Barley	extracellular	13.02	31.3
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	32.7	31.21
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	12.7	30.53
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	30.16	30.45
HORVU3Hr1G005290.2	Barley	plastid	35.56	29.95
HORVU1Hr1G023820.1	Barley	extracellular	17.46	29.73
HORVU4Hr1G016950.1	Barley	plastid	28.25	29.09
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	12.06	29.01
HORVU4Hr1G069550.1	Barley	plastid	16.51	26.67
HORVU3Hr1G005470.1	Barley	plastid	21.59	21.38
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	22.22	19.44
HORVU6Hr1G082920.1	Barley	plastid	23.49	19.32
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	19.05	17.05
HORVU3Hr1G005410.9	Barley	mitochondrion	26.98	11.32
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	28.25	8.52

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A287XM37	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU7Hr1G101970	EnsemblPlants:HORVU7Hr1G101970.2
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000B4839EF	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287XM37]

Coordinates

chrchr7H:-:610944384..610945585

Molecular Weight (calculated)

33330.0 Da

IEP (calculated)

7.264

GRAVY (calculated)

-0.063

Length

315 amino acids

Sequence
(BLAST)

001: MEGGESSGKR ASAEEVKSDI EEGEVLMTQD GGGGGRALAA AEPMAPAQID VRMDLTLLHC LGCLLPLKPP VFKCEAAGHV VCYHCRAVHG TICSRARTHC
101: GELDAVVGAA KVPCPYRAFG CERQVVYHEA ADHQRACECA PCSCPDHTCA FAGSRATLLD HFAAAHRRPA ATVRYGRSRD LGLSPSHRWH ALVGEEDGSV
201: FLVSLSPLGA ATAVSLVCVR QDSEAAPQFW CKLSVERLGG GNRDRLVLMA SPVGSSALST GAPAPGQGMF LAVPHEMLSG DTLTLTVRID LIRPAPVPAA
301: PMSTTQQART QRRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.