Factsheet for HORVU3Hr1G005450.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, peroxisome

Predictor Summary:

nucleus 3
plastid 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G129300.1	Wheat	endoplasmic reticulum, nucleus, peroxisome	68.27	66.15
TraesCS7B01G030300.1	Wheat	plastid	66.99	64.91
TraesCS4D01G110300.1	Wheat	cytosol, nucleus, plasma membrane	51.28	57.97
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	24.04	57.25
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	23.08	54.96
HORVU2Hr1G020530.1	Barley	extracellular	23.08	54.96
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	48.4	54.71
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	47.76	53.99
TraesCSU01G178600.1	Wheat	nucleus, plasma membrane, plastid	51.92	52.6
HORVU1Hr1G023820.1	Barley	extracellular	23.72	40.0
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	41.67	39.39
HORVU3Hr1G005290.2	Barley	plastid	44.23	36.9
Os01t0122701-00	Rice	plastid	11.22	34.65
EES00397	Sorghum	plastid	33.97	32.92
HORVU4Hr1G069550.1	Barley	plastid	19.87	31.79
HORVU3Hr1G005470.1	Barley	plastid	32.37	31.76
HORVU3Hr1G005430.1	Barley	plastid	25.64	31.75
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	30.45	30.16
HORVU4Hr1G016950.1	Barley	plastid	26.6	27.12
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	27.88	24.17
HORVU6Hr1G082920.1	Barley	plastid	25.64	20.89
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	19.55	17.33
HORVU3Hr1G005410.9	Barley	mitochondrion	40.71	16.91
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	39.74	11.88

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	EMBL:AK371188	UniProt:F2E4W4	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G005450
EnsemblPlants:HORVU3Hr1G005450.2	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0002007C6F
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F2E4W4]

Coordinates

chrchr3H:-:13456361..13457393

Molecular Weight (calculated)

32928.8 Da

IEP (calculated)

7.399

GRAVY (calculated)

-0.012

Length

312 amino acids

Sequence
(BLAST)

001: MQAAGASASS EERSRASPSA MEKGGDQSAK KARLELELAK GPVKGEMVVL EPAEQSTTMD VCVMMDVAVL RCPICNRPFK PPVFQCSGGH LACAQCRGER
101: PGSQWQCQRC ERGGCFDVRN AAMDAVVSSA RVECPHDGCA LYVTYHKLDD HRLACPRAPC KCAVPGCSFD GPPPALLGHL SSVHSVPAHR VQYGMVLHLQ
201: VPVAEPRRLL LGEEDGGAFL VVGGSVGLGA PIAVSVVCIR AGAFPLPHYE AKLWANGGSD TVHADFQVTS SKEPGAVAME ELTFLTVPPK LLAGAGPART
301: VSLHIRIDKI AS

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.