Factsheet for HORVU3Hr1G005400.7

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
nucleus 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G166900.1	Wheat	plasma membrane	71.55	78.55
TraesCS3D01G017400.1	Wheat	plastid	75.19	76.07
TraesCS3A01G028500.1	Wheat	plastid	75.1	75.97
HORVU3Hr1G005410.9	Barley	mitochondrion	40.13	55.79
HORVU2Hr1G020530.1	Barley	extracellular	5.46	43.51
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	5.17	41.22
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	5.08	40.46
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	11.88	39.74
HORVU1Hr1G023820.1	Barley	extracellular	6.61	37.3
Os01t0122701-00	Rice	plastid	3.45	35.64
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	10.63	33.64
HORVU4Hr1G069550.1	Barley	plastid	6.03	32.31
HORVU3Hr1G005290.2	Barley	plastid	11.21	31.28
HORVU3Hr1G005430.1	Barley	plastid	7.47	30.95
EES00397	Sorghum	plastid	8.81	28.57
HORVU3Hr1G005470.1	Barley	plastid	8.62	28.3
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	8.52	28.25
HORVU4Hr1G016950.1	Barley	plastid	7.76	26.47
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	8.24	23.89
HORVU6Hr1G082920.1	Barley	plastid	8.05	21.93
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	5.75	17.05

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A287JZY5	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G005400	EnsemblPlants:HORVU3Hr1G005400.7	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599
InterPro:TRAF-like	UniParc:UPI000B488D46	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:+:13428585..13434073

Molecular Weight (calculated)

111911.0 Da

IEP (calculated)

7.263

GRAVY (calculated)

-0.074

Length

1044 amino acids

Sequence
(BLAST)

0001: MGSSPAARSN PSRNGRRGDA MDGANRPSRS AKKPPFLLPK GWSGTAVYRC SPHLIPSITE LLSERQKGFV RKIGFGSLLS MADFEINKAL TMWLVDRFSC
0101: DTEALEFGGG VSIPVRPLVK CVLGIPSGPI QVVPGQNVDH ALYSQYSCDA KVKKAKEVAE EMCSITEEEP FCTAFMMVIL AIYLAPNTTM LVNRSLLGAA
0201: QQVGSLKQMD WCGFVADYLF KGIREFKESD APFVHLKGCV HILSVIFIDH VKHAAFPVPN GFPRLGVVTT EHNKWVASHP FGSLLVVRHL EESVYAPVLN
0301: NENGNIAQGG KCADSDTNTD ALANLPATDN DQNNQHPVSA GPGSLSIAVA SETSAQSAGT NHLHGGMSSN PAAHANPSSN GKRGSAMDGG SPPSRSAKKP
0401: RKSKSAAYRC SPRLIPPIME LLSEEQKGFV RKIGFGSLLS MADFEMNKPL TLWLVHKFSC DTKALEFGGG VSIPVRPLVK SVLGIPSGPI QVVQGLPIKG
0501: KNALYSEYCS VKGKNARKLA EEMCSITEEE PFCIAFMMVI LAIYLAPNTT VLVNKSFLGA AQQVGSLKQM DWCGFVADYL FKGIREFKNS DAPFVCLKGC
0601: VHILSVIFID LVKHAAFEVP NGFPRLGIVT TKHNKWVASH PPGSLLVRRL EESVYAPVLT NGNGNIVEGG ECADSDTNTD ALSNQSATDN DQNSQHPVSA
0701: CPGSLPIVTG LETSARSAEH IISPRSGEQL QSAGPSSEPC SAQLPNGLEV LAAAAESRNR GSPSTMEKHD RSAKKARVEL PESGQVVRAG EATIRMDMSL
0801: FSCRVCSHPV KPPVFQCNVG HLACGRCLAE LPDEQCQMCE HGGGFSRCPV MDDVVLSSTM KCSYDGCQIY VPYHELSDHQ RACPHGPCFC TETGCGFVGV
0901: PAALLGHLAA LHSVPVHKVH YGSVHQLRVS EPRVLFHAEE DDSAFLLAMD VLGMATVVSV VCIRAGAGGS PEPRYAVKLW VNGPPPPSGA AGSITLDMTA
1001: ATSSYRPGEV AVEELPAFLM VPPAYLVDCG AYKEVSLHVR IDRM

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.