Factsheet for HORVU3Hr1G005430.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G296000.1	Wheat	nucleus, plasma membrane, plastid	66.27	70.76
TraesCS3D01G017100.1	Wheat	cytosol, nucleus, plastid	80.56	63.84
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	80.95	63.75
TraesCS3B01G026900.1	Wheat	nucleus	78.97	62.19
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	71.03	56.83
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	44.05	32.94
EES00395	Sorghum	cytosol, nucleus, plastid	42.46	31.29
HORVU2Hr1G020530.1	Barley	extracellular	15.08	29.01
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	40.87	28.07
KXG32022	Sorghum	nucleus	37.3	27.89
HORVU1Hr1G062590.3	Barley	cytosol, extracellular, plastid	14.29	27.48
HORVU7Hr1G049290.1	Barley	cytosol, extracellular, plastid	14.29	27.48
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	34.52	26.36
KXG32016	Sorghum	cytosol	32.94	25.78
HORVU4Hr1G069550.1	Barley	plastid	19.84	25.64
HORVU3Hr1G005450.2	Barley	endoplasmic reticulum, nucleus, peroxisome	31.75	25.64
HORVU1Hr1G023820.1	Barley	extracellular	18.25	24.86
HORVU4Hr1G016950.1	Barley	plastid	29.37	24.18
HORVU3Hr1G005290.2	Barley	plastid	34.52	23.26
HORVU6Hr1G082920.1	Barley	plastid	26.59	17.49
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	23.81	16.67
HORVU3Hr1G005470.1	Barley	plastid	21.03	16.67
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	20.63	14.77
HORVU3Hr1G005410.9	Barley	mitochondrion	30.16	10.12
HORVU3Hr1G005400.7	Barley	plasma membrane, plastid	30.95	7.47

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A287K016	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G005430	EnsemblPlants:HORVU3Hr1G005430.1
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI000B4611D2	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_SIAH	:	:	:	:	:

Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A0A287K016]

Coordinates

chrchr3H:-:13445141..13448185

Molecular Weight (calculated)

26366.9 Da

IEP (calculated)

8.294

GRAVY (calculated)

0.140

Length

252 amino acids

Sequence
(BLAST)

001: MICVSGPARP QCEAAGHVVC CFCRAGHAAL CSRATAHCGE LDAVVGAAKV PCPYKAFGCE RYVVYHDAAG HERACQWAPC SCPEHGCAFV GSRAMLLGHF
101: AAAHQRPAVT IRYGRAWNLG LSLSHRWHAL VGDEDRSVFL VSLGPLGAAT AVSLLCVRPD GEAAPQFRCK LSVERPAGDG KDNVVLMASA VSNSALSTGA
201: PAPGQGMFLA VPQELLSGDT LTLSLRIDLI RPAAGAAPKS ATPLARTPRR MQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.