Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G030900.1 | Wheat | cytosol, nucleus, plasma membrane | 66.67 | 68.54 |
| TraesCS3A01G029500.1 | Wheat | cytosol, nucleus, peroxisome | 68.48 | 68.48 |
| TraesCS3D01G028300.1 | Wheat | nucleus, peroxisome, plastid | 66.97 | 67.79 |
| TraesCSU01G045700.1 | Wheat | nucleus, peroxisome, plastid | 68.79 | 67.76 |
| TraesCS3B01G028400.1 | Wheat | nucleus, peroxisome, plastid | 69.09 | 67.66 |
| TraesCS3D01G028400.1 | Wheat | nucleus, plasma membrane, plastid | 66.36 | 67.59 |
| TraesCSU01G043600.1 | Wheat | nucleus | 68.48 | 67.46 |
| TraesCS3B01G030800.1 | Wheat | nucleus, plasma membrane, plastid | 59.7 | 67.24 |
| TraesCS3B01G054200.1 | Wheat | nucleus, peroxisome, plastid | 67.27 | 66.87 |
| TraesCS3D01G016100.1 | Wheat | nucleus, peroxisome, plastid | 65.45 | 66.06 |
| TraesCS3B01G030700.1 | Wheat | nucleus, peroxisome, plastid | 64.24 | 66.04 |
| TraesCS3B01G055000.1 | Wheat | nucleus, peroxisome, plastid | 64.55 | 65.14 |
| TraesCS3B01G054800.1 | Wheat | nucleus, peroxisome, plastid | 64.55 | 65.14 |
| TraesCS3B01G031000.1 | Wheat | nucleus, plasma membrane, plastid | 64.55 | 65.14 |
| TraesCSU01G207000.1 | Wheat | extracellular, plastid | 24.85 | 65.08 |
| TraesCS3B01G054900.1 | Wheat | nucleus, peroxisome, plastid | 64.24 | 64.83 |
| TraesCS3B01G055200.1 | Wheat | nucleus, plasma membrane, plastid | 57.27 | 64.51 |
| TraesCSU01G222300.1 | Wheat | cytosol, peroxisome, plastid | 59.7 | 64.38 |
| TraesCS3B01G055300.1 | Wheat | cytosol, nucleus, peroxisome | 62.73 | 63.3 |
| TraesCS3B01G055100.1 | Wheat | cytosol, nucleus, peroxisome | 62.73 | 63.3 |
| TraesCSU01G206900.1 | Wheat | cytosol | 30.3 | 62.89 |
| TraesCS3B01G031300.1 | Wheat | nucleus, plasma membrane, plastid | 63.03 | 62.84 |
| HORVU3Hr1G005290.2 | Barley | plastid | 58.79 | 51.87 |
| HORVU7Hr1G049290.1 | Barley | cytosol, extracellular, plastid | 19.39 | 48.85 |
| HORVU1Hr1G062590.3 | Barley | cytosol, extracellular, plastid | 19.39 | 48.85 |
| HORVU2Hr1G020530.1 | Barley | extracellular | 19.09 | 48.09 |
| HORVU1Hr1G023820.1 | Barley | extracellular | 26.06 | 46.49 |
| HORVU3Hr1G005450.2 | Barley | endoplasmic reticulum, nucleus, peroxisome | 39.39 | 41.67 |
| EES00397 | Sorghum | plastid | 36.97 | 37.89 |
| Os01t0122701-00 | Rice | plastid | 11.52 | 37.62 |
| HORVU3Hr1G005430.1 | Barley | plastid | 26.36 | 34.52 |
| HORVU4Hr1G069550.1 | Barley | plastid | 20.3 | 34.36 |
| HORVU7Hr1G101970.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 31.21 | 32.7 |
| HORVU4Hr1G016950.1 | Barley | plastid | 28.48 | 30.72 |
| HORVU3Hr1G005470.1 | Barley | plastid | 29.09 | 30.19 |
| HORVU3Hr1G012260.1 | Barley | cytosol, nucleus | 32.42 | 29.72 |
| HORVU6Hr1G082920.1 | Barley | plastid | 25.45 | 21.93 |
| HORVU6Hr1G082930.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 17.27 | 16.19 |
| HORVU3Hr1G005410.9 | Barley | mitochondrion | 35.15 | 15.45 |
| HORVU3Hr1G005400.7 | Barley | plasma membrane, plastid | 33.64 | 10.63 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU3Hr1G005380 | EnsemblPlants:HORVU3Hr1G005380.1 | InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | UniProt:M0X1J8 |
| PFscan:PS51081 | PANTHER:PTHR10315 | PANTHER:PTHR10315:SF46 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like |
| UniParc:UPI00029676BD | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:-:13222430..13223535
Molecular Weight (calculated)
34422.6 Da
IEP (calculated)
7.679
GRAVY (calculated)
0.124
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGATAVPEV RRSRASPSPD KFDESAKKPR LDLPDGLVKQ EAAGGGGDGG AIVAVELAVR IGKHVLHCPL CTLPFKPPVY QCKRGHLACG GCVAQLPCGQ
101: CMACVDGAGF FDPCPALDTV VSSTRVQCPN AGCQRYVTYH EAADHQSACA HAPCCCTEPD CGYVGAPQSL AGHLNTVHSV PVRALQYGKA IQLRVPVSAL
201: APRLLLLGDD DNRVFLLSVG ALDAGTAAVS VVCARASAVA RPRFTCKMWV NLEPAAASGA RADSVRVEMQ MRSSTSPGAV LAVQEPTFLA VPPMYLVPPP
301: AAAAGDKAAM EVPLYIRIDK VSPWSSDALV
101: CMACVDGAGF FDPCPALDTV VSSTRVQCPN AGCQRYVTYH EAADHQSACA HAPCCCTEPD CGYVGAPQSL AGHLNTVHSV PVRALQYGKA IQLRVPVSAL
201: APRLLLLGDD DNRVFLLSVG ALDAGTAAVS VVCARASAVA RPRFTCKMWV NLEPAAASGA RADSVRVEMQ MRSSTSPGAV LAVQEPTFLA VPPMYLVPPP
301: AAAAGDKAAM EVPLYIRIDK VSPWSSDALV
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
Arabidopsis Description
E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.