Factsheet for TraesCS3B01G055100.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	88.38	98.63
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	95.11	95.11
TraesCSU01G206900.1	Wheat	cytosol	46.18	94.97
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	94.5	94.5
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	94.19	94.19
TraesCSU01G222300.1	Wheat	cytosol, peroxisome, plastid	87.46	93.46
TraesCSU01G207000.1	Wheat	extracellular, plastid	35.78	92.86
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	87.77	89.41
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	88.99	88.99
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	84.71	84.71
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	74.92	83.62
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	79.82	81.31
TraesCS3D01G028300.1	Wheat	nucleus, peroxisome, plastid	78.9	79.14
TraesCS3D01G028400.1	Wheat	nucleus, plasma membrane, plastid	74.92	75.62
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	75.84	73.59
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	73.39	72.29
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	70.64	69.79
HORVU3Hr1G005380.1	Barley	cytosol, nucleus, plastid	63.3	62.73
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	59.63	60.0
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	59.94	59.57
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	60.55	59.46
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	55.05	57.88
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	40.37	42.58
TraesCS7B01G030300.1	Wheat	plastid	41.59	42.24
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	33.64	39.86
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	33.64	39.86
Os01t0122701-00	Rice	plastid	11.93	38.61
TraesCS7B01G147600.1	Wheat	plastid	25.99	37.28
EES00397	Sorghum	plastid	33.03	33.54
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	29.66	31.49
TraesCS3B01G053300.1	Wheat	plastid	19.57	31.37
TraesCS3B01G054000.1	Wheat	cytosol	29.05	30.35
TraesCS3B01G026900.1	Wheat	nucleus	29.36	30.0
TraesCS7B01G040200.1	Wheat	cytosol	28.44	29.43
TraesCS3B01G028000.1	Wheat	mitochondrion	22.94	28.41
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	27.22	28.34
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	28.44	26.05
TraesCS3B01G018200.1	Wheat	plastid	33.95	25.4
TraesCS3B01G573000.1	Wheat	cytosol	23.24	23.82
TraesCS3B01G572900.1	Wheat	cytosol	25.69	23.2
TraesCS7B01G197600.1	Wheat	cytosol	17.13	22.05
TraesCS3B01G116800.1	Wheat	cytosol	21.1	20.91
TraesCS6B01G375600.1	Wheat	plastid	22.02	20.75
TraesCS6B01G375700.1	Wheat	plastid	20.49	18.93
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	26.3	17.52
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	34.25	16.47
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.99	14.31
TraesCS1B01G344300.1	Wheat	nucleus	34.86	13.38

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	TMHMM:TMhelix	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G055100
EnsemblPlants:TraesCS3B01G055100.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:-:28517677..28518765

Molecular Weight (calculated)

34853.5 Da

IEP (calculated)

7.818

GRAVY (calculated)

0.097

Length

327 amino acids

Sequence
(BLAST)

001: MQGAAAAAER RSRPSPDKAD ESSKKARLDL PDGHMKQEAA CEGDGGAIVG AAYIQRVELA VRIDKQMLHC PLCTHPFKPP VFQCKAGHPA CSGCVALLPF
101: RQCKACVDGG GFFDPCPTLD TLVSSTRIGC PNVGCQWYVT YHEVTEHQKV CPYAPCRCTE PGCGYVGAPQ ALAGHLRTVH LVPVRAVQYG KVSKLQLSVS
201: TMRLVLLDDD NCVFLMTVGA LGAGITAVSV VCARARAVTR PRFTCKMWVN LETPPAAVAN CGKEDMVLVD MHIRSISSPG AVVAAGEPTF LTVPPMYLVP
301: AAGDGASMEV PLHIRIDKLS PWSDALV

Best Arabidopsis Sequence Match ( AT1G66630.1 )
(BLAST)

001: MENITNNSER SLDRPKRQRP VSMENVGGTA SGSEVARSAT LLELDLLDCP ICYHKLGAPI YQCDNGHIAC SSCCKKVKYK CPYCSLRIGF FRSRILEKIV
101: EAVVVSCPNA KYGCTEKIPY DNESESAHER VCEFTLCYCP EPECKYTGVY TDLYRHYHAE HKTDHSWFKC GEYNNAWLHV TGEKLSFLVL QEYEDGPLVV
201: VQCSMESHGI CVTVNCIAPC APGVGEFSCH LIYRNGSEKI TFESKKMNKI QKVSPENHVA NYKPIPYYLR GEASNFMSIP YYLLDEASIL KMQICIRRSG
301: EEV

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.