Factsheet for TraesCS3B01G054000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G043700.1	Wheat	cytosol	84.98	84.18
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	78.59	79.35
TraesCS3B01G028000.1	Wheat	mitochondrion	65.5	77.65
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	75.08	76.8
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	73.8	66.19
KXG32025	Sorghum	cytosol	35.78	35.9
OQU86430	Sorghum	cytosol, nucleus, plastid	28.43	33.71
TraesCS7B01G147600.1	Wheat	plastid	24.28	33.33
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	32.59	32.8
EES00400	Sorghum	cytosol	32.91	31.4
TraesCS3B01G053300.1	Wheat	plastid	20.13	30.88
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	33.23	30.86
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	32.59	30.72
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	28.75	30.72
TraesCS7B01G030300.1	Wheat	plastid	31.31	30.43
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	28.43	30.38
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	30.99	30.22
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	31.31	30.15
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	29.39	29.68
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	31.31	29.43
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	30.67	29.18
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	30.35	29.05
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	30.35	29.05
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	30.67	29.0
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	25.56	28.99
TraesCS7B01G040200.1	Wheat	cytosol	29.07	28.8
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	30.03	28.75
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	25.24	28.62
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	29.71	28.44
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	29.39	28.13
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	29.39	28.13
TraesCS3B01G026900.1	Wheat	nucleus	28.11	27.5
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	27.48	26.79
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	25.88	26.3
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	25.88	25.8
TraesCS3B01G116800.1	Wheat	cytosol	24.28	23.03
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	25.88	22.69
TraesCS6B01G375600.1	Wheat	plastid	24.6	22.19
TraesCS3B01G572900.1	Wheat	cytosol	25.24	21.82
TraesCS3B01G573000.1	Wheat	cytosol	22.04	21.63
TraesCS7B01G197600.1	Wheat	cytosol	16.93	20.87
Os01t0121900-00	Rice	cytosol	19.17	20.27
TraesCS6B01G375700.1	Wheat	plastid	21.73	19.21
TraesCS3B01G018200.1	Wheat	plastid	26.52	18.99
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	25.88	16.5
TraesCS3B01G079200.1	Wheat	cytosol, plastid	25.88	13.64
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	28.75	13.24
TraesCS1B01G344300.1	Wheat	nucleus	31.63	11.62

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3B01G054000	EnsemblPlants:TraesCS3B01G054000.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:27865301..27867024

Molecular Weight (calculated)

33146.8 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.081

Length

313 amino acids

Sequence
(BLAST)

001: MVRTRGGKDN WVLPPDAGVP LGDDGVQLKE EEGETAATVM AAAAVAAPRV EIAVDFDKSL LDCPLCSLPL KPPVFQCPAK HVACGPCAES QANKCPACDG
101: AYERDEGADR YLLAVRVPCP NQAYGCGSSL VYCMVSDHRL VCPHAPCRCP EPGCGFLGPP PALRGHLAEC HQWQVTDIAY GSVLEVQMQA LEQGRRLLAA
201: EDGERLFLLV ASERGVKVVR VSAAAEEEGP AASWYRCKVW VHAPVDTDTG HMDVVMLDAK GSCAVPSEEA AMGAGGRCLS VPSVVPAPEG GGIVLRLRID
301: KEVKASRSPR PRG

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.