CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32025	Sorghum	cytosol	41.46	43.59
OQU86430	Sorghum	cytosol, nucleus, plastid	33.84	42.05
EES00397	Sorghum	plastid	38.11	38.82
TraesCS3D01G016200.1	Wheat	cytosol, nucleus, peroxisome	32.93	34.84
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	31.71	33.99
TraesCSU01G043700.1	Wheat	cytosol	32.62	33.86
TraesCS3B01G054000.1	Wheat	cytosol	31.4	32.91
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	32.93	30.95
TraesCS3B01G028000.1	Wheat	mitochondrion	24.7	30.68
EES02585	Sorghum	cytosol, nucleus, plastid	29.88	30.15
OQU86433	Sorghum	cytosol, nucleus, plastid	32.01	29.41
EES00395	Sorghum	cytosol, nucleus, plastid	30.18	28.95
KXG32022	Sorghum	nucleus	28.35	27.6
OQU88982	Sorghum	plastid	21.04	27.38
KXG32016	Sorghum	cytosol	25.61	26.09
OQU86440	Sorghum	nucleus, plasma membrane, plastid	25.3	24.7
Os01t0121900-00	Rice	cytosol	21.65	23.99

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	EntrezGene:8070427	UniProt:C5XE68	EnsemblPlants:EES00400
ProteinID:EES00400	ProteinID:EES00400.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0061630	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	ProteinID:OQU86454.1	ProteinID:OQU86455.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G092400	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0001A84817	RefSeq:XP_002455280.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:8035819..8038633

Molecular Weight (calculated)

34176.8 Da

IEP (calculated)

7.398

GRAVY (calculated)

-0.024

Length

328 amino acids

Sequence
(BLAST)

001: MRTTRQKSKA QMEESSTGHA NPQVQIPEEE PQESAGESAM VVTVNGAAAA VEITVRIAKA RLHCPVCTLP LKPPVFQCAF GHLACGVCHV TSSSGGGGAG
101: RCSVCGDGGG GYARSTAMED IVRSAKVLCP HDAYGCRTYV TYYDAAEHQR ACPHAPCLCS EPGCGFAGTP AALRDHLAGA HSWPVDRIRY GAALRLRVPE
201: LDPAQHRRLL AAGDDEGGQV FFLAVRAIRD RPFRVVSLVC ARPGAAAGCP RYACTIRAAQ QPSDAAAAAG EVSAESVVLE MAPVPSSAAP GETSIEEAAS
301: LVVLRRTLPA GAAAAGEMHL TVRIDRIV

Best Arabidopsis Sequence Match ( AT1G66660.2 )
(BLAST)

001: MARSGGNDGH RAGDSRLSKR QRLPPSPDES EEELDPELFE EPSNLEGYED GEFEEDEEEF EEEEEELEEE EDEEEEEEEN VTTDEQSGSP KSSQPVKLQS
101: SDVLDCPTCC EPLKRPIYQC SNGHLACSSC CQKLNKKCSF CRCNIGDIRC RAMEKVIEAS IVPCPNAKHG CKETTTYCNQ SSHEKVCKFV RCSCPVSNCN
201: YVSSYSNLKS HACSTAHVWG EDDIHFQLVI DRPRIFNMNL GRKKTVVFKE EKEGDLIVVQ AFKGLEGVYV TVNRIAHMAP GIRDLSCSLA KLNEYSTLRS
301: GSLVKKIQKV REKMHLEDDL MWIPPKMLSG DHWKMQICIA YGYKFIHI

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:F4IEX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.