CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86433	Sorghum	cytosol, nucleus, plastid	56.35	39.78
EES02585	Sorghum	cytosol, nucleus, plastid	40.48	31.38
KXG32025	Sorghum	cytosol	30.56	24.68
EES00397	Sorghum	plastid	27.38	21.43
KXG32016	Sorghum	cytosol	27.38	21.43
EES00400	Sorghum	cytosol	27.38	21.04
HORVU4Hr1G016950.1	Barley	plastid	25.0	20.59
EES00395	Sorghum	cytosol, nucleus, plastid	27.78	20.47
OQU86430	Sorghum	cytosol, nucleus, plastid	21.43	20.45
OQU86440	Sorghum	nucleus, plasma membrane, plastid	26.98	20.24
KXG32022	Sorghum	nucleus	26.98	20.18
TraesCS3A01G065900.1	Wheat	cytosol	18.25	20.09
TraesCS3B01G053300.1	Wheat	plastid	15.87	19.61
TraesCS3A01G065800.1	Wheat	cytosol	14.68	18.88
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	22.62	17.59
TraesCS3B01G116800.1	Wheat	cytosol	23.02	17.58
TraesCS3A01G020900.1	Wheat	cytosol	19.05	16.11
TraesCSU01G040400.1	Wheat	cytosol	19.05	16.11
TraesCS6B01G375600.1	Wheat	plastid	21.83	15.85
TraesCS6D01G324500.1	Wheat	plastid	21.83	15.76
TraesCS6A01G343600.1	Wheat	plastid	21.43	15.56
TraesCS6B01G375700.1	Wheat	plastid	21.83	15.54
HORVU6Hr1G082920.1	Barley	plastid	21.83	14.36
TraesCS7B01G197600.1	Wheat	cytosol	13.89	13.78
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	19.05	13.64
TraesCS7D01G107300.1	Wheat	nucleus	25.0	13.04
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	24.6	12.63
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	25.4	12.43
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	24.21	11.96
TraesCS3B01G079200.1	Wheat	cytosol, plastid	24.21	10.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	UniProt:A0A1W0W3N6	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0019538	GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010
InterPro:IPR013083	EnsemblPlants:OQU88982	ProteinID:OQU88982	ProteinID:OQU88982.1	PFAM:PF03145	PFscan:PS51081
PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3002G128500	SUPFAM:SSF49599	InterPro:TRAF-like
UniParc:UPI0009DC8F02	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:17761022..17762003

Molecular Weight (calculated)

26521.7 Da

IEP (calculated)

8.080

GRAVY (calculated)

-0.059

Length

252 amino acids

Sequence
(BLAST)

001: MSFQSPSSEA SNSKNTMVVS SAGVKEEPEQ GGVAHGGRGS PGAGATVAKQ ATQALERPRI NISVDVQLLP CIVVECRRPL KPPVVKCEAG HLLCGACLNG
101: GHCRKCDRAS AFAHCGPELD VFISDARVSC PFNSYGCGTS IIYHVTATHQ DTCAYASCQC AVPGCPFTAT LPRLRDHLVP QHHHYRLPVV EGDERSLFLL
201: SVCPCGGANG VASCAVSVSC VKKSATAEAG PRFTYMLWAK SPAAPPQQTI SR

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.