CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plasma membrane, plastid
Any Predictor:	nucleus, plasma membrane, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G053300.1	Wheat	plastid	16.67	27.45
OQU88982	Sorghum	plastid	20.24	26.98
OQU86430	Sorghum	cytosol, nucleus, plastid	20.83	26.52
EES00397	Sorghum	plastid	24.7	25.78
EES00400	Sorghum	cytosol	24.7	25.3
OQU86433	Sorghum	cytosol, nucleus, plastid	26.79	25.21
TraesCS3A01G065800.1	Wheat	cytosol	14.29	24.49
TraesCS3A01G065900.1	Wheat	cytosol	16.67	24.45
KXG32025	Sorghum	cytosol	22.62	24.36
EES00395	Sorghum	cytosol, nucleus, plastid	24.11	23.68
KXG32022	Sorghum	nucleus	23.51	23.44
EES02585	Sorghum	cytosol, nucleus, plastid	22.62	23.38
HORVU4Hr1G016950.1	Barley	plastid	20.83	22.88
KXG32016	Sorghum	cytosol	21.73	22.67
TraesCS3D01G100700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	19.35	20.06
TraesCS6D01G324500.1	Wheat	plastid	20.54	19.77
TraesCS6A01G343600.1	Wheat	plastid	20.24	19.6
TraesCS6B01G375600.1	Wheat	plastid	19.94	19.31
TraesCS7B01G197600.1	Wheat	cytosol	14.58	19.29
TraesCS3B01G116800.1	Wheat	cytosol	18.75	19.09
HORVU6Hr1G082920.1	Barley	plastid	21.73	19.06
TraesCS3A01G020900.1	Wheat	cytosol	15.48	17.45
TraesCSU01G040400.1	Wheat	cytosol	15.48	17.45
TraesCS7D01G107300.1	Wheat	nucleus	24.11	16.77
TraesCS4D01G102500.1	Wheat	cytosol, nucleus, peroxisome, plastid	24.11	15.73
TraesCS6B01G375700.1	Wheat	plastid	16.37	15.54
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	23.21	15.29
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	21.43	14.66
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	13.99	13.35
TraesCS3B01G079200.1	Wheat	cytosol, plastid	21.43	12.12

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1W0VWE1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0046872	InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	EnsemblPlants:OQU86440	ProteinID:OQU86440
ProteinID:OQU86440.1	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like	EnsemblPlantsGene:SORBI_3003G091550
SUPFAM:SSF49599	InterPro:TRAF-like	UniParc:UPI0009DC83DE	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:7963389..7964924

Molecular Weight (calculated)

35943.8 Da

IEP (calculated)

7.550

GRAVY (calculated)

-0.250

Length

336 amino acids

Sequence
(BLAST)

001: RNHGEAAGEA SLTSELLAPP PPPPPPGSSK RRRSGKRARD GPLLFGTQLI RHEPPAEKQP PPTAVQVDKG KLYCSLCSCT LTPPIYQCAV GHLACCACRV
101: KLPGRRCRTC SDRGAPSSSA YAHCPALDLF FTDLRVPCDF QEYGCERFVS YFLSASHRDT CEHAPCHCPE PGCPLLRSTR TLAAHLASDQ SWPVEDVAYG
201: APIPLADDAS LFPMAAGPLG DGAAVSVVLV RATAKPPPLP RFTCTFYANP PPGAAELAGS YFFATVPVRS SALADGAGVA PEKELYFAVP RETLHGSNRE
301: LFLSVRIDRS PAPEPAALED KKMMITDHSN SLKADQ

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.