Factsheet for TraesCS6B01G375700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G082930.1	Barley	cytosol, mitochondrion, nucleus, plastid	55.08	55.4
TraesCS3B01G116800.1	Wheat	cytosol	35.59	38.18
TraesCS3B01G053300.1	Wheat	plastid	18.08	31.37
TraesCS6B01G375600.1	Wheat	plastid	29.66	30.26
TraesCS7B01G147600.1	Wheat	plastid	16.1	25.0
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	21.47	24.68
TraesCS7B01G040200.1	Wheat	cytosol	21.47	24.05
EES02585	Sorghum	cytosol, nucleus, plastid	22.03	24.0
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	20.9	23.79
OQU86433	Sorghum	cytosol, nucleus, plastid	23.45	23.25
TraesCS3B01G079100.1	Wheat	cytosol, endoplasmic reticulum, nucleus	21.19	23.08
TraesCS4B01G109100.1	Wheat	cytosol, nucleus, plasma membrane	17.8	22.83
TraesCS5B01G187100.1	Wheat	cytosol, nucleus, plastid	17.51	22.46
TraesCS3B01G028000.1	Wheat	mitochondrion	16.67	22.35
TraesCS3B01G027500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	19.77	22.29
TraesCS3B01G030800.1	Wheat	nucleus, plasma membrane, plastid	18.08	21.84
OQU88982	Sorghum	plastid	15.54	21.83
TraesCS3B01G054000.1	Wheat	cytosol	19.21	21.73
TraesCS3B01G026900.1	Wheat	nucleus	19.49	21.56
TraesCS3B01G055200.1	Wheat	nucleus, plasma membrane, plastid	17.8	21.5
TraesCS3B01G030900.1	Wheat	cytosol, nucleus, plasma membrane	19.49	21.5
TraesCS3B01G028400.1	Wheat	nucleus, peroxisome, plastid	20.34	21.36
TraesCS3B01G054200.1	Wheat	nucleus, peroxisome, plastid	19.77	21.08
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	19.77	21.02
TraesCS7B01G197600.1	Wheat	cytosol	14.97	20.87
TraesCS3B01G054800.1	Wheat	nucleus, peroxisome, plastid	19.21	20.8
TraesCS3B01G055000.1	Wheat	nucleus, peroxisome, plastid	19.21	20.8
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	19.21	20.67
TraesCS3B01G055100.1	Wheat	cytosol, nucleus, peroxisome	18.93	20.49
TraesCS3B01G031000.1	Wheat	nucleus, plasma membrane, plastid	18.93	20.49
TraesCS3B01G054900.1	Wheat	nucleus, peroxisome, plastid	18.64	20.18
TraesCS4B01G105700.1	Wheat	cytosol, nucleus, peroxisome	27.97	20.16
TraesCS7B01G030300.1	Wheat	plastid	18.08	19.88
TraesCS3B01G030700.1	Wheat	nucleus, peroxisome, plastid	17.8	19.63
TraesCS3B01G055300.1	Wheat	cytosol, nucleus, peroxisome	18.08	19.57
TraesCS3B01G027400.1	Wheat	nucleus, peroxisome, plastid	16.95	19.35
TraesCS3B01G031300.1	Wheat	nucleus, plasma membrane, plastid	18.08	19.34
TraesCS3B01G027000.1	Wheat	cytosol, nucleus, plastid	19.21	19.05
TraesCS3B01G572900.1	Wheat	cytosol	18.93	18.51
TraesCS3B01G573000.1	Wheat	cytosol	16.1	17.87
OQU86440	Sorghum	nucleus, plasma membrane, plastid	15.54	16.37
TraesCS3B01G018200.1	Wheat	plastid	20.06	16.25
TraesCS3B01G079200.1	Wheat	cytosol, plastid	21.47	12.79
TraesCS3B01G018100.1	Wheat	nucleus, peroxisome, plasma membrane	20.34	10.59
TraesCS1B01G344300.1	Wheat	nucleus	20.62	8.57

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF33	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS6B01G375700	EnsemblPlants:TraesCS6B01G375700.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:650596362..650597525

Molecular Weight (calculated)

38683.8 Da

IEP (calculated)

8.252

GRAVY (calculated)

-0.028

Length

354 amino acids

Sequence
(BLAST)

001: MGRKRKSTMG GKTPPSKGRP CCKSVAVPSL VAVEAPEPVA ASNAMVPHHQ PKGGPGLLKQ ACSAVAVSAA KEKVVKLDLD VPMRVLNCDV CYGLLKAPIF
101: QCSLLRHVAC RSCSEFHGGK CRPCADLAAS AVYVQSSYLD TLFGYIKEAC PYKKYGCTST IVIGDLAAAH RATCEFEPCW CTRCSFKGSP ADLVSHFTLT
201: HAWSAHKFTY GQDYIYNTDE MDSSFVYTDK MDSWMVRYEL FLGEDGGVFL LVVDLAPFFQ EFPFPLVTLV CVRNSAAAAA GPVYTYSVRA DAPPAQRRKL
301: KLEIKEVASC PDWRMERDCF PLLPGMLREE KTSKSVLVRI CVSKSESSSA SCSS

Best Arabidopsis Sequence Match ( AT5G37870.1 )
(BLAST)

001: MVGVLLSERN GSQKRHCSSI SSDDGRKRVD KTRSAMLTDL DILDCPICYQ ALKIPVFQCG NGHLACSSCC PKLRNKCPAC ALPVGHIRCR AMERVLESVL
101: VPCRYADLGC TKTIYYGRES THEKICNFSP CSCPVQGCNY TGSYKDLYEH YDLTHSTGST AYSFNGVSYI AAMMFISDKI LIERVYEKKL LFVVQCFEEP
201: CGVYVSVSCI APSAPEVGEF SYGLLYTTWE GVTMTYQSPK VKKVLKVSSQ RPKDSFMLIP HSLLCGPLLG MMLCINELKQ M

Arabidopsis Description

Putative E3 ubiquitin-protein ligase SINA-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.