Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G138000.1 | Wheat | nucleus | 92.72 | 92.72 |
TraesCS7B01G351200.1 | Wheat | cytosol, nucleus, plastid | 77.22 | 79.22 |
TraesCS3B01G026900.1 | Wheat | nucleus | 77.22 | 76.25 |
TraesCS3B01G027500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 71.52 | 71.97 |
TraesCS3B01G027000.1 | Wheat | cytosol, nucleus, plastid | 59.49 | 52.66 |
Zm00001d008514_P001 | Maize | cytosol, nucleus, plastid | 41.77 | 39.17 |
TraesCS3B01G572900.1 | Wheat | cytosol | 44.62 | 38.95 |
EES00395 | Sorghum | cytosol, nucleus, plastid | 41.46 | 38.3 |
Os01t0121950-00 | Rice | cytosol, endoplasmic reticulum, nucleus | 44.3 | 38.15 |
KXG32022 | Sorghum | nucleus | 39.87 | 37.39 |
TraesCS3B01G079000.1 | Wheat | cytosol, nucleus, plastid | 35.76 | 36.33 |
TraesCS7B01G147600.1 | Wheat | plastid | 25.32 | 35.09 |
TraesCS3B01G030800.1 | Wheat | nucleus, plasma membrane, plastid | 31.65 | 34.13 |
KXG32016 | Sorghum | cytosol | 33.86 | 33.23 |
TraesCS3B01G573000.1 | Wheat | cytosol | 33.23 | 32.92 |
TraesCS3B01G079100.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 33.54 | 32.62 |
TraesCS3B01G028800.1 | Wheat | cytosol, nucleus, peroxisome | 34.18 | 32.43 |
TraesCS7B01G030300.1 | Wheat | plastid | 32.91 | 32.3 |
TraesCS3B01G054300.1 | Wheat | nucleus, peroxisome, plastid | 33.23 | 31.91 |
TraesCS3B01G028400.1 | Wheat | nucleus, peroxisome, plastid | 33.86 | 31.75 |
TraesCS3B01G054200.1 | Wheat | nucleus, peroxisome, plastid | 32.91 | 31.33 |
TraesCS4B01G109100.1 | Wheat | cytosol, nucleus, plasma membrane | 27.22 | 31.16 |
TraesCS3B01G055200.1 | Wheat | nucleus, plasma membrane, plastid | 28.8 | 31.06 |
TraesCS3B01G030900.1 | Wheat | cytosol, nucleus, plasma membrane | 31.01 | 30.53 |
TraesCS3B01G030700.1 | Wheat | nucleus, peroxisome, plastid | 30.7 | 30.22 |
TraesCS3B01G054800.1 | Wheat | nucleus, peroxisome, plastid | 31.01 | 29.97 |
TraesCS3B01G054900.1 | Wheat | nucleus, peroxisome, plastid | 31.01 | 29.97 |
TraesCS3B01G031000.1 | Wheat | nucleus, plasma membrane, plastid | 31.01 | 29.97 |
TraesCS5B01G187100.1 | Wheat | cytosol, nucleus, plastid | 25.95 | 29.71 |
TraesCS3B01G055000.1 | Wheat | nucleus, peroxisome, plastid | 30.7 | 29.66 |
TraesCS3B01G031300.1 | Wheat | nucleus, plasma membrane, plastid | 31.01 | 29.61 |
TraesCS3B01G053300.1 | Wheat | plastid | 18.99 | 29.41 |
TraesCS3B01G027400.1 | Wheat | nucleus, peroxisome, plastid | 28.8 | 29.35 |
TraesCS3B01G054000.1 | Wheat | cytosol | 28.8 | 29.07 |
TraesCS3B01G055300.1 | Wheat | cytosol, nucleus, peroxisome | 30.06 | 29.05 |
TraesCS3B01G055100.1 | Wheat | cytosol, nucleus, peroxisome | 29.43 | 28.44 |
TraesCS3B01G028000.1 | Wheat | mitochondrion | 22.47 | 26.89 |
TraesCS3B01G116800.1 | Wheat | cytosol | 25.32 | 24.24 |
TraesCS7B01G197600.1 | Wheat | cytosol | 19.3 | 24.02 |
TraesCS6B01G375700.1 | Wheat | plastid | 24.05 | 21.47 |
TraesCS3B01G018200.1 | Wheat | plastid | 29.11 | 21.05 |
TraesCS6B01G375600.1 | Wheat | plastid | 22.47 | 20.46 |
TraesCS4B01G105700.1 | Wheat | cytosol, nucleus, peroxisome | 27.53 | 17.72 |
TraesCS3B01G018100.1 | Wheat | nucleus, peroxisome, plasma membrane | 29.43 | 13.68 |
TraesCS3B01G079200.1 | Wheat | cytosol, plastid | 24.68 | 13.13 |
TraesCS1B01G344300.1 | Wheat | nucleus | 27.22 | 10.09 |
Protein Annotations
Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:7-in-absentia-prot_TRAF-dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006511 | GO:GO:0007275 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
InterPro:IPR008974 | InterPro:IPR013010 | InterPro:IPR013083 | PFAM:PF03145 | PFscan:PS51081 | PANTHER:PTHR10315 |
PANTHER:PTHR10315:SF33 | InterPro:SINA-like | SUPFAM:SSF49599 | InterPro:TRAF-like | EnsemblPlantsGene:TraesCS7B01G040200 | EnsemblPlants:TraesCS7B01G040200.1 |
InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_SIAH | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7B:-:40286571..40287760
Molecular Weight (calculated)
33038.9 Da
IEP (calculated)
6.974
GRAVY (calculated)
0.058
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGEMCGKS VSEEVKPEWE EGEVLMQGEG GGGGDGGAAT AAGEAMAPVQ IDVRMDVALL HCQACLLPLK PPVFKCEAAG HVVCCFCRAG HAALCSRAGT
101: HCGELDAVLG AAKVPCPYKV FGCERYVVYH GAADHQRACQ CAPCSCPEPG CVFVGSRAML LDHFAAGHQR HAVTVRYGRP WNLGFSLSRR WHVLVGEDRS
201: VFLVSLGPLG AATAVSLVCV RPDGAGEAAP QFRCKLSVER PAGDDKDNLV LMTSAVSSSA LSTGAPAPGQ GMFLAVPQEL LSGDTLMLSV RIDLIRPAGG
301: APKSATPQAR TPRRMQ
101: HCGELDAVLG AAKVPCPYKV FGCERYVVYH GAADHQRACQ CAPCSCPEPG CVFVGSRAML LDHFAAGHQR HAVTVRYGRP WNLGFSLSRR WHVLVGEDRS
201: VFLVSLGPLG AATAVSLVCV RPDGAGEAAP QFRCKLSVER PAGDDKDNLV LMTSAVSSSA LSTGAPAPGQ GMFLAVPQEL LSGDTLMLSV RIDLIRPAGG
301: APKSATPQAR TPRRMQ
001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR
Arabidopsis Description
Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.