Factsheet for TraesCS7A01G138000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G040200.1	Wheat	cytosol	92.72	92.72
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	77.22	76.25
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	73.42	73.19
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	50.0	71.17
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	58.23	52.12
TraesCS3A01G505400.1	Wheat	cytosol	44.62	39.28
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	41.77	39.17
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	44.3	38.15
EES00395	Sorghum	cytosol, nucleus, plastid	41.14	38.01
KXG32022	Sorghum	nucleus	39.56	37.09
TraesCS2A01G361500.1	Wheat	cytosol	35.76	35.76
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	35.76	34.14
TraesCS3A01G505500.1	Wheat	cytosol	33.86	33.54
KXG32016	Sorghum	cytosol	33.54	32.92
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	29.75	31.76
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	33.23	31.72
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	32.59	31.4
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	32.59	31.21
TraesCS3A01G065900.1	Wheat	cytosol	20.57	28.38
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	27.22	28.1
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	27.85	25.21
TraesCS3A01G065800.1	Wheat	cytosol	15.51	25.0
TraesCS3A01G020900.1	Wheat	cytosol	20.57	21.81
TraesCS6A01G343600.1	Wheat	plastid	21.52	19.6
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	28.16	17.45
TraesCS3A01G028000.1	Wheat	plasma membrane	29.11	14.18
TraesCS3A01G028600.1	Wheat	plastid	29.43	13.44
TraesCS3A01G028500.1	Wheat	plastid	29.11	8.91

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7A01G138000	EnsemblPlants:TraesCS7A01G138000.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7A:-:90480339..90481541

Molecular Weight (calculated)

33034.8 Da

IEP (calculated)

7.166

GRAVY (calculated)

0.067

Length

316 amino acids

Sequence
(BLAST)

001: MEGGESCGNS VSEEVKPEWE EGEVLMQGGG GEGGGAVTAA GESMAPVQID VRMDVALLHC QACLLPLKPP VFKCEAAGHV VCCFCRAGHA ALCSRAGTHC
101: GELDAVVGAA KVPCPYKVFG CERYVVYHGA ADHQRACQCA PCSCPEPGCV FVGSRAMLLD HFAAGHQRHA VTVRYGRPWN LGFSLSRRWH VLVGEDRSVF
201: LVSLGPLGAA TAVSLVYVRP DGAAEAAPQF RCKLSVERPA GDGKDNLVLM TSAVSSSALS TGAPAPGQGM FLAVPQELLS GDTLMLSVRI DLIRPAGGAP
301: KSATPTPQAR TPRRLQ

Best Arabidopsis Sequence Match ( AT1G66650.1 )
(BLAST)

001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.