Factsheet for TraesCS7A01G451200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G440300.1	Wheat	cytosol, endoplasmic reticulum, nucleus	89.91	90.19
TraesCS7B01G351200.1	Wheat	cytosol, nucleus, plastid	85.8	88.31
HORVU7Hr1G101970.2	Barley	cytosol, endoplasmic reticulum, nucleus	80.76	81.27
TraesCS7A01G138000.1	Wheat	nucleus	73.19	73.42
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	68.77	68.12
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	47.63	68.02
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	55.84	50.14
Zm00001d008514_P001	Maize	cytosol, nucleus, plastid	40.06	37.69
EES00395	Sorghum	cytosol, nucleus, plastid	40.38	37.43
TraesCS3A01G505400.1	Wheat	cytosol	41.01	36.21
Os01t0121950-00	Rice	cytosol, endoplasmic reticulum, nucleus	41.64	35.97
KXG32022	Sorghum	nucleus	38.17	35.91
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	36.28	34.74
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	30.6	32.77
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	33.75	32.33
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	33.12	31.82
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	32.49	31.4
KXG32016	Sorghum	cytosol	31.86	31.37
TraesCS2A01G361500.1	Wheat	cytosol	31.23	31.33
TraesCS3A01G505500.1	Wheat	cytosol	29.65	29.47
TraesCS3A01G065900.1	Wheat	cytosol	19.87	27.51
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	25.55	26.47
TraesCS3A01G065800.1	Wheat	cytosol	16.09	26.02
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	27.13	24.64
TraesCS3A01G020900.1	Wheat	cytosol	20.82	22.15
TraesCS6A01G343600.1	Wheat	plastid	23.34	21.33
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	26.81	16.67
TraesCS3A01G028000.1	Wheat	plasma membrane	28.71	14.02
TraesCS3A01G028600.1	Wheat	plastid	29.34	13.44
TraesCS3A01G028500.1	Wheat	plastid	29.02	8.91

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF33	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS7A01G451200	EnsemblPlants:TraesCS7A01G451200.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7A:-:644526033..644527411

Molecular Weight (calculated)

33211.8 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.028

Length

317 amino acids

Sequence
(BLAST)

001: MEGGQSSGKR ASAEEVKSEP EEGEVLMMMQ DGGEGGGASV AAESMAPAQI DVRMDLTLLH CQGCLLPLKP PVFKCEAAGH VVCYHCRAVH STICSRASTH
101: CGELDAVVGA AKVPCAYRAF GCERHVVYHE AADHQRACHC APCSCPDPAC GFAGNRAALL DHFAAVHRRP AATVRYGRAR DLGLSVSRRW HALVGEEDGS
201: AFLVSLGPLG AATAVSLVCV RPDGEAAPQF WCKLSVERLG GDNRDRLVLM ASAVSSSALS TGAPAPGQGM FLAVPQELLS GDTLTLTVRI DMIRPAAGAA
301: AAPKSTTPQP RTARRMQ

Best Arabidopsis Sequence Match ( AT5G62800.1 )
(BLAST)

001: MEDSNSHPQN QTSKRKSSHP QKKQRMENET RSAKLLDLDV LDCPVCFEPL TIPTFQCDDG HIVCNFCFAK VSNKCPGPGC DLPIGNKRCF AMERVLESAF
101: VPCQNTEFGC TKSVSYEKVS SHEKECNYSQ CSCPNLECNY TGSYNIIYGH FMRRHLYNST IVSSKWGYST VDVLINIKEK VSVLWESRQK LLFVVQCFKE
201: RHGVYVTVRR IAPPASEFKK FSYRLSYSID GHNVTYESPE VKRLLEVNSQ IPDDSFMFVP NCLLHGEMLE LKLGIKKLKQ TCIIQKLSGL VPGSVLYIVG
301: FLIKPANEVQ QVTIAQETVM EDPPTSLFKN SVPIREDQIQ NAITNSIR

Arabidopsis Description

Protein with RING/U-box and TRAF-like domains [Source:TAIR;Acc:AT5G62800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.