Factsheet for TraesCS3A01G065700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G066200.1	Wheat	cytosol, nucleus, plastid	89.12	90.21
TraesCS3B01G079000.1	Wheat	cytosol, nucleus, plastid	83.69	89.07
TraesCS3A01G031400.1	Wheat	cytosol, nucleus, peroxisome	64.05	64.63
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	63.75	63.75
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	57.4	57.58
HORVU1Hr1G023820.1	Barley	extracellular	31.42	56.22
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	45.32	50.68
HORVU4Hr1G069550.1	Barley	plastid	26.28	44.62
Os01t0122701-00	Rice	plastid	12.08	39.6
EES00397	Sorghum	plastid	38.07	39.13
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	24.77	36.94
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	34.74	36.28
TraesCS7A01G138000.1	Wheat	nucleus	34.14	35.76
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	34.44	35.62
HORVU3Hr1G012260.1	Barley	cytosol, nucleus	38.67	35.56
TraesCS3A01G065800.1	Wheat	cytosol	20.24	34.18
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	29.91	32.35
TraesCS3A01G065900.1	Wheat	cytosol	20.54	29.69
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	31.42	29.46
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	29.91	28.37
TraesCS2A01G361500.1	Wheat	cytosol	26.28	27.53
TraesCS3A01G505400.1	Wheat	cytosol	29.31	27.02
TraesCS3A01G505500.1	Wheat	cytosol	23.87	24.76
TraesCS6A01G343600.1	Wheat	plastid	24.47	23.34
TraesCS3A01G020900.1	Wheat	cytosol	19.34	21.48
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	28.7	18.63
TraesCS3A01G028600.1	Wheat	plastid	38.37	18.35
TraesCS3A01G028000.1	Wheat	plasma membrane	35.35	18.03
TraesCS3A01G028500.1	Wheat	plastid	39.88	12.79

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	InterPro:7-in-absentia-prot_TRAF-dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
InterPro:IPR008974	InterPro:IPR013010	InterPro:IPR013083	PFAM:PF03145	PFscan:PS51081	PANTHER:PTHR10315
PANTHER:PTHR10315:SF46	InterPro:SINA-like	SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G065700	EnsemblPlants:TraesCS3A01G065700.1
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:+:38621153..38622697

Molecular Weight (calculated)

34065.8 Da

IEP (calculated)

6.358

GRAVY (calculated)

0.046

Length

331 amino acids

Sequence
(BLAST)

001: MQGAGAEGRN RGSPSTMEEA DGSAKKARLE ELPNGHVKQE EIGEYHAAGG GDDGGAIVAA EAGHVSRVEL AVKIDMSVLH CPLCALPFKP PVFQCNKGGH
101: LACGGCVALL PGGQCRACED GGGFFAPCPA LDAVVSSTKV ACPHAGCQTY VPYHEAADHR SPCPHAPCAC AEPGCGFVGP PHALAGHLAD LHSVPVRTVQ
201: YGRVSQVPVS GPRQLLVGEE DGRAFLLTVG ALGAAAAAVS VVCVRASATT QPRFSCKMWV NLPQPADAAN GGRADMILVD IQVRSSATPG AVIALDEPTF
301: LAVPRTYMVP VDGDAASMEV PLNIRIDKIS R

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.