Factsheet for TraesCS3A01G031400.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G028800.1	Wheat	cytosol, nucleus, peroxisome	86.89	85.59
TraesCS3A01G030000.1	Wheat	nucleus, plasma membrane, plastid	84.15	83.38
TraesCS3B01G054300.1	Wheat	nucleus, peroxisome, plastid	83.23	82.98
TraesCSU01G044900.1	Wheat	cytosol, nucleus, peroxisome	83.23	82.23
HORVU3Hr1G005290.2	Barley	plastid	77.44	67.91
TraesCS3A01G065700.1	Wheat	cytosol, nucleus, plastid	64.63	64.05
TraesCS3A01G029500.1	Wheat	cytosol, nucleus, peroxisome	64.02	63.64
TraesCS5A01G435500.1	Wheat	cytosol, nucleus, plastid	40.85	45.27
EES00397	Sorghum	plastid	39.02	39.75
Os01t0122701-00	Rice	plastid	11.89	38.61
TraesCS3A01G021100.2	Wheat	cytosol, nucleus, plastid	22.87	33.78
TraesCS7A01G138000.1	Wheat	nucleus	31.4	32.59
TraesCS7A01G451200.1	Wheat	cytosol, nucleus, plastid	31.4	32.49
TraesCS3A01G028800.1	Wheat	cytosol, nucleus, plastid	31.1	31.88
TraesCS3A01G065800.1	Wheat	cytosol	18.6	31.12
TraesCS3A01G029400.1	Wheat	cytosol, nucleus, peroxisome	26.83	28.76
TraesCS3A01G028900.1	Wheat	cytosol, nucleus, plastid	30.49	28.33
TraesCS3A01G029300.1	Wheat	nucleus, peroxisome, plasma membrane, plastid	29.88	28.08
TraesCS3A01G065900.1	Wheat	cytosol	18.29	26.2
TraesCS2A01G361500.1	Wheat	cytosol	24.39	25.32
TraesCS3A01G505500.1	Wheat	cytosol	22.87	23.51
TraesCS3A01G505400.1	Wheat	cytosol	25.61	23.4
TraesCS3A01G020900.1	Wheat	cytosol	20.43	22.48
TraesCS6A01G343600.1	Wheat	plastid	22.26	21.04
TraesCS4A01G201600.1	Wheat	cytosol, nucleus, peroxisome	25.91	16.67
TraesCS3A01G028600.1	Wheat	plastid	35.06	16.62
TraesCS3A01G028000.1	Wheat	plasma membrane	30.79	15.56
TraesCS3A01G028500.1	Wheat	plastid	34.45	10.95

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:IPR008974
InterPro:IPR013010	InterPro:IPR013083	PFscan:PS51081	PANTHER:PTHR10315	PANTHER:PTHR10315:SF46	InterPro:SINA-like
SUPFAM:SSF49599	InterPro:TRAF-like	EnsemblPlantsGene:TraesCS3A01G031400	EnsemblPlants:TraesCS3A01G031400.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_SIAH
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:17257440..17258525

Molecular Weight (calculated)

33959.8 Da

IEP (calculated)

7.015

GRAVY (calculated)

0.126

Length

328 amino acids

Sequence
(BLAST)

001: MQGAGVEGRS RGSPSAMDKA DESAKKARLD LPDGHLVKQE LVAHDAAAGG GAIVAVAEHS PRAELAVKID MCVLHCPLCT LPFKPPVFQC KGGHLACGGC
101: VAQQPSGQCG ACTDGCGFFD PCPALDAVVS STRIECPNAG CQRYVTYHEA DEHRSACPHA LCRCTEPGCV FVGAATDLAG HLSAAHSVPV RTIHYGKVSR
201: FQVPVSTPRL LLVNEDDGRV FVLTVGALGA AATALSVVCA RASAATRPRF TCKMWVNLAA SAVANGGKAD IVLVEMQMRS STSPGAVVAA GEPTFLAVPQ
301: VYLVPGADGG AMEMPLNVRI DKTSPWSD

Best Arabidopsis Sequence Match ( AT5G37930.1 )
(BLAST)

001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS

Arabidopsis Description

E3 ubiquitin-protein ligase SINA-like 10 [Source:UniProtKB/Swiss-Prot;Acc:Q84K34]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.